GWAS1619772_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1619772_H (total lipids in very large HDL measurement QTL GWAS1619772 (human)) Homo sapiens

Symbol: GWAS1619772_H
Name: total lipids in very large HDL measurement QTL GWAS1619772 (human)
RGD ID: 597523698
Trait: blood lipid amount   (VT:0003949)    
LOD Score: Not Available
P Value: 3.0E-52
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,284,964 - 58,284,965RGD_MAPPER_PIPELINEGRCh38
GRCh371558,577,163 - 58,577,164RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1619772_HHumanblood lipid amount  IAGPrs10162642405850206 GWAS_CATALOGPMID:36764567

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1619772_HHumantotal lipids in very large HDL measurement  IAGPrs10162642405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
155228779LOC126862139P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:58576109-58577308155828391058285109Human


Peak: (rs10162642)
Human AssemblyChrPosition (strand)Source
GRCh381558,284,964 - 58,284,965RGD_MAPPER_PIPELINE


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597526687GWAS1622761_Hphospholipids in very small VLDL measurement QTL GWAS1622761 (human)6e-80blood phospholipid amount (VT:0006084)155828496458284965Human
597526041GWAS1622115_Hphospholipids:total lipids ratio QTL GWAS1622115 (human)1e-24phospholipids:total lipids ratio155828496458284965Human
597514779GWAS1610853_Hhigh density lipoprotein cholesterol measurement QTL GWAS1610853 (human)2e-45high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828496458284965Human
597512858GWAS1608932_Hfree cholesterol in HDL measurement QTL GWAS1608932 (human)2e-38blood HDL cholesterol amount (VT:0000184)155828496458284965Human
597518229GWAS1614303_Hcholine measurement QTL GWAS1614303 (human)8e-37choline measurement155828496458284965Human
597513238GWAS1609312_Htriglycerides to total lipids in medium LDL percentage QTL GWAS1609312 (human)8e-46blood LDL triglyceride amount (VT:0010699)155828496458284965Human
597526353GWAS1622427_Htotal lipids in very small VLDL measurement QTL GWAS1622427 (human)2e-77total lipids in very small VLDL measurement155828496458284965Human
597517905GWAS1613979_Hphosphatidylcholine measurement QTL GWAS1613979 (human)4e-47phosphatidylcholine measurement155828496458284965Human
597513874GWAS1609948_Hcholesteryl ester measurement QTL GWAS1609948 (human)3e-53blood lipid amount (VT:0003949)155828496458284965Human
597526349GWAS1622423_Hcholesterol in very small VLDL measurement QTL GWAS1622423 (human)7e-59cholesterol in very small VLDL measurement 155828496458284965Human

1 to 10 of 44 rows


1 to 20 of 44 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1619772_H GCST90269649 Total lipids in very large HDL (UKB data field 23552) 88,329 European ancestry individuals A 0.209813 3E-52 51.523 rs10162642 0.0807956 total lipids in very large HDL measurement (EFO:0022312)
 PMID:36764567
GWAS1486934_H GCST010242 HDL cholesterol levels 403,943 European ancestry individuals G 0.788315 2E-93 92.699 rs10162642 0.0480088 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:32203549
GWAS1791552_H GCST90269613 Concentration of very small VLDL particles (UKB data field 23516) 88,329 European ancestry individuals A 0.209813 2E-69 68.699 rs10162642 0.101311 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36764567
GWAS1791681_H GCST90269530 Average diameter for HDL particles (UKB data field 23433) 88,329 European ancestry individuals A 0.209813 3E-56 55.523 rs10162642 0.0829735 HDL particle size (OBA:2050115)
 PMID:36764567
GWAS1604094_H GCST90134518 Total cholesterol levels 58,701 Korean ancestry individuals A NR 2E-7 6.699 rs10162642 1.64 total cholesterol measurement (EFO:0004574)
 PMID:35884923
GWAS1608932_H GCST90269519 Free cholesterol in HDL (UKB data field 23422) 88,329 European ancestry individuals A 0.209813 2E-38 37.699 rs10162642 0.0677234 free cholesterol in HDL measurement (EFO:0022264)
 PMID:36764567
GWAS1608952_H GCST90269618 Free cholesterol in very small VLDL (UKB data field 23521) 88,329 European ancestry individuals A 0.209813 1E-68 68 rs10162642 0.100204 free cholesterol in very small VLDL measurement (EFO:0022275)
 PMID:36764567
GWAS1609269_H GCST90269620 Concentration of IDL particles (UKB data field 23523) 88,329 European ancestry individuals A 0.209813 3E-14 13.523 rs10162642 0.0438947 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:36764567
GWAS1609272_H GCST90269619 Triglycerides in very small VLDL (UKB data field 23522) 88,329 European ancestry individuals A 0.209813 9E-67 66.046 rs10162642 0.0987644 triglycerides in very small VLDL measurement (EFO:0022144)
 PMID:36764567
GWAS1609312_H GCST90269720 Triglycerides to total lipids in medium LDL percentage (UKB data field 23623) 88,329 European ancestry individuals A 0.209813 8E-46 45.097 rs10162642 0.081652 triglycerides to total lipids in medium LDL percentage (EFO:0022334)
 PMID:36764567
GWAS1609948_H GCST90269617 Cholesteryl esters in very small VLDL (UKB data field 23520) 88,329 European ancestry individuals A 0.209813 3E-53 52.523 rs10162642 0.0866848 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS1609966_H GCST90269640 Triglycerides in medium LDL (UKB data field 23543) 88,329 European ancestry individuals A 0.209813 7E-36 35.155 rs10162642 0.0715696 triglycerides in medium LDL measurement (EFO:0022322)
 PMID:36764567
GWAS1610853_H GCST90269655 Concentration of large HDL particles (UKB data field 23558) 88,329 European ancestry individuals A 0.209813 2E-45 44.699 rs10162642 0.0735025 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36764567
GWAS1611200_H GCST90269657 Phospholipids in large HDL (UKB data field 23560) 88,329 European ancestry individuals A 0.209813 4E-42 41.398 rs10162642 0.0708449 phospholipids in large HDL measurement (EFO:0022190)
 PMID:36764567
GWAS1611204_H GCST90269656 Total lipids in large HDL (UKB data field 23559) 88,329 European ancestry individuals A 0.209813 4E-43 42.398 rs10162642 0.0716253 total lipids in large HDL (EFO:0022189)
 PMID:36764567
GWAS1611215_H GCST90269531 Phosphoglycerides levels (UKB data field 23434) 88,268 European ancestry individuals A 0.20985 6E-38 37.222 rs10162642 0.0711265 phosphoglycerides measurement (EFO:0022291)
 PMID:36764567
GWAS1611564_H GCST90269651 Cholesterol in very large HDL (UKB data field 23554) 88,329 European ancestry individuals A 0.209813 8E-38 37.097 rs10162642 0.0686451 cholesterol in very large HDL measurement (EFO:0022229)
 PMID:36764567
GWAS1611793_H GCST90269660 Free cholesterol in large HDL (UKB data field 23563) 88,329 European ancestry individuals A 0.209813 5E-46 45.302 rs10162642 0.0740483 free cholesterol in large HDL measurement (EFO:0022157)
 PMID:36764567
GWAS1611843_H GCST90269652 Cholesteryl esters in very large HDL (UKB data field 23555) 88,329 European ancestry individuals A 0.209813 2E-37 36.699 rs10162642 0.0678836 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS1612208_H GCST90269745 Triglycerides to total lipids in small HDL percentage (UKB data field 23648) 88,329 European ancestry individuals A 0.209813 2E-16 15.699 rs10162642 0.0460098 triglycerides to total lipids in small HDL percentage (EFO:0022336)
 PMID:36764567
1 to 20 of 44 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90269649 GWAS Catalog

Note Type Note Reference