GWAS1618777_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1618777_H (total lipids in large LDL QTL GWAS1618777 (human)) Homo sapiens

Symbol: GWAS1618777_H
Name: total lipids in large LDL QTL GWAS1618777 (human)
RGD ID: 597522703
Trait: total lipids in large LDL
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,433,640 - 58,433,641RGD_MAPPER_PIPELINEGRCh38
GRCh371558,725,839 - 58,725,840RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1618777_HHumantotal lipids in large LDL  IAGPrs633695405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736877LIPClipase C, hepatic type155843199158569844Human


Peak: (rs633695)
Human AssemblyChrPosition (strand)Source
GRCh381558,433,640 - 58,433,641RGD_MAPPER_PIPELINE


1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597517213GWAS1613287_Hremnant cholesterol measurement QTL GWAS1613287 (human)2e-27remnant cholesterol measurement155843364058433641Human
597518877GWAS1614951_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1614951 (human)6e-52omega-6 polyunsaturated fatty acid measurement155843364058433641Human
597506580GWAS1602654_Homega-3 polyunsaturated fatty acid measurement QTL GWAS1602654 (human)2e-78omega-3 polyunsaturated fatty acid measurement155843364058433641Human
597510038GWAS1606112_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1606112 (human)1e-59omega-6 polyunsaturated fatty acid measurement155843364058433641Human
597512851GWAS1608925_Hfree cholesterol in VLDL measurement QTL GWAS1608925 (human)2e-11blood VLDL cholesterol amount (VT:0005144)155843364058433641Human
597522703GWAS1618777_Htotal lipids in large LDL QTL GWAS1618777 (human)2e-16total lipids in large LDL155843364058433641Human
597516681GWAS1612755_Hfree cholesterol in small HDL measurement QTL GWAS1612755 (human)9e-28blood HDL cholesterol amount (VT:0000184)155843364058433641Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597528712GWAS1624786_Hlevel of Phosphatidylcholine (16:0_18:1) in blood serum QTL GWAS1624786 (human)3e-08level of Phosphatidylcholine (16:0_18:1) in blood serum155843364058433641Human
597522698GWAS1618772_Hcholesteryl ester measurement QTL GWAS1618772 (human)8e-13blood lipid amount (VT:0003949)155843364058433641Human

1 to 10 of 56 rows


1 to 20 of 67 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1618777_H GCST90269628 Total lipids in large LDL (UKB data field 23531) 88,329 European ancestry individuals G 0.292296 2E-16 15.699 rs633695 0.0424846 total lipids in large LDL (EFO:0022163)
 PMID:36764567
GWAS1489642_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 2E-30 29.699 rs633695 0.062875934 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1521388_H GCST90060738 Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals T NR 1E-10 10 rs633695 0.0766 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals T NR 1E-10 10 rs633695 0.0312 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals G NR 1E-10 10 rs633695 0.0659 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 1E-10 10 rs633695 0.0698 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060692 Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals A NR 1E-10 10 rs633695 0.0733 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060790 Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals G NR 1E-10 10 rs633695 0.1051 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060733 Phosphatidylethanolamine(38:5)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 1E-10 10 rs633695 0.0608 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1791089_H GCST90269606 Concentration of small VLDL particles (UKB data field 23509) 88,329 European ancestry individuals G 0.292296 1E-30 30 rs633695 0.0593715 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36764567
GWAS1791445_H GCST90269525 Concentration of VLDL particles (UKB data field 23428) 88,329 European ancestry individuals G 0.292296 4E-39 38.398 rs633695 0.0679194 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36764567
GWAS1791562_H GCST90269500 VLDL cholesterol levels (UKB data field 23403) 88,329 European ancestry individuals G 0.292296 3E-20 19.523 rs633695 0.0480666 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36764567
GWAS1602654_H GCST90133362 Total omega-3 fatty acid levels 114,999 European ancestry individuals A 0.71 2E-78 77.699 rs633695 0.084 omega-3 polyunsaturated fatty acid measurement (EFO:0010119)
 PMID:35692035
GWAS1603007_H GCST90133363 Linoleic acid levels 114,999 European ancestry individuals A 0.71 8E-55 54.097 rs633695 0.07 linoleic acid measurement (EFO:0006807)
 PMID:35692035
GWAS1606112_H GCST90133364 Total omega-6 fatty acid levels 114,999 European ancestry individuals A 0.71 1E-59 59 rs633695 0.073 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:35692035
GWAS1608233_H GCST90269623 Cholesterol in IDL (UKB data field 23526) 88,329 European ancestry individuals G 0.292296 4E-26 25.398 rs633695 0.0534956 cholesterol in IDL measurement (EFO:0021899)
 PMID:36764567
GWAS1608564_H GCST90269625 Free cholesterol in IDL (UKB data field 23528) 88,329 European ancestry individuals G 0.292296 8E-34 33.097 rs633695 0.0614886 free cholesterol in IDL measurement (EFO:0022181)
 PMID:36764567
GWAS1608582_H GCST90269622 Phospholipids in IDL (UKB data field 23525) 88,329 European ancestry individuals G 0.292296 8E-88 87.097 rs633695 0.100338 phospholipids in IDL measurement (EFO:0022164)
 PMID:36764567
GWAS1608635_H GCST90269603 Cholesteryl esters in medium VLDL (UKB data field 23506) 88,329 European ancestry individuals G 0.292296 6E-10 9.222 rs633695 0.0321008 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269621 Total lipids in IDL (UKB data field 23524) 88,329 European ancestry individuals G 0.292296 8E-55 54.097 rs633695 0.0789478 total lipids in IDL (EFO:0022161)
 PMID:36764567
1 to 20 of 67 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90269628 GWAS Catalog

Note Type Note Reference