GWAS1618338_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1618338_H (cholesteryl ester measurement QTL GWAS1618338 (human)) Homo sapiens

Symbol: GWAS1618338_H
Name: cholesteryl ester measurement QTL GWAS1618338 (human)
RGD ID: 597522264
Trait: blood lipid amount   (VT:0003949)    
LOD Score: Not Available
P Value: 7.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,279,711 - 58,279,712RGD_MAPPER_PIPELINEGRCh38
GRCh371558,571,910 - 58,571,911RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1618338_HHumanblood lipid amount  IAGPrs11854242405850206 GWAS_CATALOGPMID:36764567

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1618338_HHumancholesteryl ester measurement  IAGPrs11854242405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11854242)
Human AssemblyChrPosition (strand)Source
GRCh381558,279,711 - 58,279,712RGD_MAPPER_PIPELINE


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597512509GWAS1608583_Htotal lipids in IDL QTL GWAS1608583 (human)3e-16total lipids in IDL155827971158279712Human
597513182GWAS1609256_Htotal lipids in lipoprotein particles measurement QTL GWAS1609256 (human)6e-13blood lipid amount (VT:0003949)155827971158279712Human
597518552GWAS1614626_Hpolyunsaturated fatty acid measurement QTL GWAS1614626 (human)6e-19milk polyunsaturated fatty acid amount (VT:0010374)milk polyunsaturated fatty acid measurement (CMO:0000821)155827971158279712Human
597522264GWAS1618338_Hcholesteryl ester measurement QTL GWAS1618338 (human)7e-11blood lipid amount (VT:0003949)155827971158279712Human
597517211GWAS1613285_Hremnant cholesterol measurement QTL GWAS1613285 (human)3e-10remnant cholesterol measurement155827971158279712Human
597512506GWAS1608580_Hphospholipids in IDL measurement QTL GWAS1608580 (human)4e-24phospholipids in IDL measurementblood intermediate density lipoprotein phospholipid level (CMO:0001574)155827971158279712Human
597516020GWAS1612094_Hcholesterol in small VLDL measurement QTL GWAS1612094 (human)9e-10cholesterol in small VLDL measurement 155827971158279712Human
597521942GWAS1618016_Htotal cholesterol measurement QTL GWAS1618016 (human)1e-09total cholesterol measurementblood total cholesterol level (CMO:0000051)155827971158279712Human
597517174GWAS1613248_Htotal phospholipids in lipoprotein particles measurement QTL GWAS1613248 (human)6e-23blood phospholipid amount (VT:0006084)155827971158279712Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 10 of 21 rows


1 to 20 of 22 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1618338_H GCST90269513 Cholesteryl esters in VLDL (UKB data field 23416) 88,329 European ancestry individuals T 0.274994 7E-11 10.155 rs11854242 0.0347661 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS1750081_H GCST90093036 Phospholipid levels in very small VLDL 115,082 European ancestry individuals C 0.724926 6E-73 72.222 rs11854242 0.0822344 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1602652_H GCST90133362 Total omega-3 fatty acid levels 114,999 European ancestry individuals C 0.72 3E-17 16.523 rs11854242 0.039 omega-3 polyunsaturated fatty acid measurement (EFO:0010119)
 PMID:35692035
GWAS1603005_H GCST90133363 Linoleic acid levels 114,999 European ancestry individuals C 0.72 2E-15 14.699 rs11854242 0.036 linoleic acid measurement (EFO:0006807)
 PMID:35692035
None Available GCST90133364 Total omega-6 fatty acid levels 114,999 European ancestry individuals C 0.72 3E-17 16.523 rs11854242 0.038 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:35692035
GWAS1608242_H GCST90269625 Free cholesterol in IDL (UKB data field 23528) 88,329 European ancestry individuals T 0.274994 5E-11 10.302 rs11854242 0.034006 free cholesterol in IDL measurement (EFO:0022181)
 PMID:36764567
GWAS1608580_H GCST90269622 Phospholipids in IDL (UKB data field 23525) 88,329 European ancestry individuals T 0.274994 4E-24 23.398 rs11854242 0.0522466 phospholipids in IDL measurement (EFO:0022164)
 PMID:36764567
GWAS1608583_H GCST90269621 Total lipids in IDL (UKB data field 23524) 88,329 European ancestry individuals T 0.274994 3E-16 15.523 rs11854242 0.0422543 total lipids in IDL (EFO:0022161)
 PMID:36764567
GWAS1609256_H GCST90269520 Total lipids in lipoprotein particles (UKB data field 23423) 88,329 European ancestry individuals T 0.274994 6E-13 12.222 rs11854242 0.0377016 total lipids in lipoprotein particles measurement (EFO:0022309)
 PMID:36764567
GWAS1610898_H GCST90269546 Linoleic acid levels (UKB data field 23449) 88,268 European ancestry individuals T 0.27504 3E-14 13.523 rs11854242 0.0397368 linoleic acid measurement (EFO:0006807)
 PMID:36764567
GWAS1611801_H GCST90269547 Docosahexaenoic acid levels (UKB data field 23450) 88,268 European ancestry individuals T 0.27504 4E-14 13.398 rs11854242 0.0383509 docosahexaenoic acid measurement (EFO:0007761)
 PMID:36764567
GWAS1612094_H GCST90269609 Cholesterol in small VLDL (UKB data field 23512) 88,329 European ancestry individuals T 0.274994 9E-10 9.046 rs11854242 0.0326986 cholesterol in small VLDL measurement (EFO:0022228)
 PMID:36764567
GWAS1612396_H GCST90269610 Cholesteryl esters in small VLDL (UKB data field 23513) 88,329 European ancestry individuals T 0.274994 2E-11 10.699 rs11854242 0.0359601 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS1613248_H GCST90269508 Total phospholipids in lipoprotein particles (UKB data field 23411) 88,329 European ancestry individuals T 0.274994 6E-23 22.222 rs11854242 0.0500937 total phospholipids in lipoprotein particles measurement (EFO:0022315)
 PMID:36764567
GWAS1613263_H GCST90269516 Total free cholesterol levels (UKB data field 23419) 88,329 European ancestry individuals T 0.274994 6E-12 11.222 rs11854242 0.0359492 free cholesterol measurement (EFO:0008591)
 PMID:36764567
GWAS1613285_H GCST90269499 Remnant cholesterol (non-HDL, non-LDL -cholesterol) levels (UKB data field 23402) 88,329 European ancestry individuals T 0.274994 3E-10 9.523 rs11854242 0.0335158 remnant cholesterol measurement (EFO:0010815)
 PMID:36764567
GWAS1613970_H GCST90269535 Sphingomyelins levels (UKB data field 23438) 88,268 European ancestry individuals T 0.27504 1E-15 15 rs11854242 0.039905 sphingomyelin measurement (EFO:0010118)
 PMID:36764567
GWAS1614617_H GCST90269541 Omega-3 fatty acids levels (UKB data field 23444) 88,268 European ancestry individuals T 0.27504 1E-14 14 rs11854242 0.0396492 omega-3 polyunsaturated fatty acid measurement (EFO:0010119)
 PMID:36764567
GWAS1614626_H GCST90269543 Polyunsaturated fatty acids levels (UKB data field 23446) 88,268 European ancestry individuals T 0.27504 6E-19 18.222 rs11854242 0.0461006 polyunsaturated fatty acid measurement (EFO:0010733)
 PMID:36764567
None Available GCST90269542 Omega-6 fatty acids levels (UKB data field 23445) 88,268 European ancestry individuals T 0.27504 1E-15 15 rs11854242 0.0416175 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:36764567
1 to 20 of 22 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90269513 GWAS Catalog

Note Type Note Reference