GWAS1618129_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1618129_H (Abdominal Aortic Aneurysm QTL GWAS1618129 (human)) Homo sapiens

Symbol: GWAS1618129_H
Name: Abdominal Aortic Aneurysm QTL GWAS1618129 (human)
RGD ID: 597522055
Trait: Abdominal Aortic Aneurysm
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3819,279,408 - 9,279,409RGD_MAPPER_PIPELINEGRCh38
GRCh3719,339,467 - 9,339,468RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1618129_HHumanabdominal aortic aneurysm  IAGPrs9442580405850206 GWAS_CATALOGPMID:37845353

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1618129_HHumanAbdominal aortic aneurysm  IAGPrs9442580405850206 GWAS_CATALOGPMID:37845353
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1618129_HHumanAbdominal Aortic Aneurysm  IAGPrs9442580405850206 GWAS_CATALOGPMID:37845353

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
401826551LOC132088746Neanderthal introgressed variant-containing enhancer experimental_9566192793239279492Human


Peak: (rs9442580)
Human AssemblyChrPosition (strand)Source
GRCh3819,279,408 - 9,279,409RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597458697GWAS1554771_Hsize QTL GWAS1554771 (human)1e-15size192794089279409Human
596955564GWAS1075083_Hsize QTL GWAS1075083 (human)1e-15size192794089279409Human
597522055GWAS1618129_HAbdominal Aortic Aneurysm QTL GWAS1618129 (human)2e-10Abdominal Aortic Aneurysm192794089279409Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1618129_H GCST90432152 Abdominal aortic aneurysm 37,214 European ancestry cases, 997,776 European ancestry controls, 2,007 African ancestry cases, 88,331 African ancestry controls ? NR 2E-10 9.699 rs9442580 0.0748 Abdominal Aortic Aneurysm (EFO:0004214)
 PMID:37845353
GWAS1745324_H GCST90475362 height (mean, inv-normal transformed) 424,305 European ancestry individuals C 0.8674 1E-140 140 rs9442580 0.1014 body height (OBA:VT0001253)
 PMID:39024449
GWAS1762527_H GCST90475359 Height (maximum, inv-normal transformed) 424,305 European ancestry individuals C 0.8674 1E-137 137 rs9442580 0.09954 body height (OBA:VT0001253)
 PMID:39024449
GWAS1770163_H GCST90479636 height (minimum, inv-normal transformed) 119,012 African American or Afro-Caribbean individuals, 57,810 Hispanic or Latin American individuals, 6,384 East Asian ancestry individuals, 424,306 European ancestry individuals C 0.8846 2E-23 22.699 rs9442580 0.05408 body height (OBA:VT0001253)
 PMID:39024449
GWAS1554771_H GCST90309355 Body size (confirmatory factor analysis Factor 21) 329,172 European ancestry individuals ? NR 1E-15 15 rs9442580 N/A size (EFO:0001695)
 PMID:38965376
GWAS1801220_H GCST90479635 height (mean, inv-normal transformed) 119,012 African American or Afro-Caribbean individuals, 57,810 Hispanic or Latin American individuals, 6,384 East Asian ancestry individuals, 424,305 European ancestry individuals C 0.8846 2E-26 25.699 rs9442580 0.05976 body height (OBA:VT0001253)
 PMID:39024449
GWAS1801568_H GCST90479634 Height (maximum, inv-normal transformed) 119,011 African American or Afro-Caribbean individuals, 57,810 Hispanic or Latin American individuals, 6,384 East Asian ancestry individuals, 424,305 European ancestry individuals C 0.8846 1E-26 26 rs9442580 0.05938 body height (OBA:VT0001253)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90432152 GWAS Catalog

Note Type Note Reference