GWAS1616893_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1616893_H (body fat percentage QTL GWAS1616893 (human)) Homo sapiens

Symbol: GWAS1616893_H
Name: body fat percentage QTL GWAS1616893 (human)
RGD ID: 597520819
Trait: body fat mass   (VT:0010482)    
Measurement Type: body fat percentage   (CMO:0000302)    
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,448,022 - 53,448,023RGD_MAPPER_PIPELINEGRCh38
GRCh371553,740,219 - 53,740,220RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1616893_HHumanbody fat percentage  IAGPrs16966102405850206 GWAS_CATALOGPMID:37867527

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1616893_HHumanbody fat mass  IAGPrs16966102405850206 GWAS_CATALOGPMID:37867527

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1616893_HHumanbody fat percentage  IAGPrs16966102405850206 GWAS_CATALOGPMID:37867527

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38612523LOC105370826uncharacterized LOC105370826155344579553552999Human


Peak: (rs16966102)
Human AssemblyChrPosition (strand)Source
GRCh381553,448,022 - 53,448,023RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597520819GWAS1616893_Hbody fat percentage QTL GWAS1616893 (human)7e-09body fat mass (VT:0010482)body fat percentage (CMO:0000302)155344802253448023Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1616893_H GCST90432180 Body fat percentage (adjusted for testosterone and SHBG) 154,337 British ancestry females ? NR 7E-9 8.155 rs16966102 0.12 body fat percentage (EFO:0007800)
 PMID:37867527
Database
Acc Id
Source(s)
GWAS Catalog GCST90432180 GWAS Catalog

Note Type Note Reference