GWAS1616021_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1616021_H (educational attainment QTL GWAS1616021 (human)) Homo sapiens

Symbol: GWAS1616021_H
Name: educational attainment QTL GWAS1616021 (human)
RGD ID: 597519947
Trait: educational attainment
LOD Score: Not Available
P Value: 7.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,267,033 - 43,267,034RGD_MAPPER_PIPELINEGRCh38
GRCh371543,559,231 - 43,559,232RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1616021_HHumaneducational attainment  IAGPrs748404405850206 GWAS_CATALOGPMID:35361970

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs748404)
Human AssemblyChrPosition (strand)Source
GRCh381543,267,033 - 43,267,034RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597519947GWAS1616021_Heducational attainment QTL GWAS1616021 (human)7e-11educational attainment154326703343267034Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597378625GWAS1474699_Hlung carcinoma QTL GWAS1474699 (human)0.000001lung carcinoma154326703343267034Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1616021_H GCST90105038 Educational attainment 3,037,499 European ancestry individuals T 0.7784 7E-11 10.155 rs748404 0.00820686 educational attainment (EFO:0011015)
 PMID:35361970
GWAS1474699_H GCST000459 Lung cancer 1,952 European ancestry cases, 1,438 European ancestry controls ? NR 0.000001 6 rs748404 1.15 lung carcinoma (EFO:0001071)
 PMID:19654303
Database
Acc Id
Source(s)
GWAS Catalog GCST90105038 GWAS Catalog

Note Type Note Reference