GWAS1612200_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1612200_H (free cholesterol to total lipids in small HDL percentage QTL GWAS1612200 (human)) Homo sapiens

Symbol: GWAS1612200_H
Name: free cholesterol to total lipids in small HDL percentage QTL GWAS1612200 (human)
RGD ID: 597516126
Trait: blood HDL cholesterol amount   (VT:0000184)    
LOD Score: Not Available
P Value: 1.0E-37
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,351,888 - 58,351,889RGD_MAPPER_PIPELINEGRCh38
GRCh371558,644,087 - 58,644,088RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1612200_HHumanblood HDL cholesterol amount  IAGPrs4775033405850206 GWAS_CATALOGPMID:36764567

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1612200_HHumanfree cholesterol to total lipids in small HDL percentage  IAGPrs4775033405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs4775033)
Human AssemblyChrPosition (strand)Source
GRCh381558,351,888 - 58,351,889RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597523036GWAS1619110_Htriglycerides in IDL measurement QTL GWAS1619110 (human)1e-36triglycerides in IDL measurementblood lipoprotein triglyceride level (CMO:0002685)155835188858351889Human
597514847GWAS1610921_Htriglycerides in very large HDL measurement QTL GWAS1610921 (human)1e-34blood HDL triglyceride amount (VT:0010698)155835188858351889Human
597516126GWAS1612200_Hfree cholesterol to total lipids in small HDL percentage QTL GWAS1612200 (human)1e-37blood HDL cholesterol amount (VT:0000184)155835188858351889Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597515818GWAS1611892_Hcholesteryl esters to total lipids in small HDL percentage QTL GWAS1611892 (human)2e-27cholesteryl esters to total lipids in small HDL percentage 155835188858351889Human
597512820GWAS1608894_Htriglycerides in large LDL measurement QTL GWAS1608894 (human)8e-28blood LDL triglyceride amount (VT:0010699)155835188858351889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597392212GWAS1488286_Hapolipoprotein A 1 measurement QTL GWAS1488286 (human)2e-61apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155835188858351889Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1612200_H GCST90269744 Free cholesterol to total lipids in small HDL percentage (UKB data field 23647) 88,329 European ancestry individuals T 0.120338 1E-37 37 rs4775033 0.0899817 free cholesterol to total lipids in small HDL percentage (EFO:0022285)
 PMID:36764567
GWAS1488286_H GCST010241 Apolipoprotein A1 levels 393,193 European ancestry individuals A 0.879582 2E-61 60.699 rs4775033 0.0500198 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:32203549
GWAS1608894_H GCST90269633 Triglycerides in large LDL (UKB data field 23536) 88,329 European ancestry individuals T 0.120338 8E-28 27.097 rs4775033 0.0788427 triglycerides in large LDL measurement (EFO:0022319)
 PMID:36764567
GWAS1610921_H GCST90269654 Triglycerides in very large HDL (UKB data field 23557) 88,329 European ancestry individuals T 0.120338 1E-34 34 rs4775033 0.0881034 triglycerides in very large HDL measurement (EFO:0022324)
 PMID:36764567
GWAS1611892_H GCST90269743 Cholesteryl esters to total lipids in small HDL percentage (UKB data field 23646) 88,329 European ancestry individuals T 0.120338 2E-27 26.699 rs4775033 0.0781233 cholesteryl esters to total lipids in small HDL percentage (EFO:0022254)
 PMID:36764567
GWAS1619110_H GCST90269626 Triglycerides in IDL (UKB data field 23529) 88,329 European ancestry individuals T 0.120338 1E-36 36 rs4775033 0.0908858 triglycerides in IDL measurement (EFO:0022149)
 PMID:36764567
Database
Acc Id
Source(s)
GWAS Catalog GCST90269744 GWAS Catalog

Note Type Note Reference