GWAS1611315_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1611315_H (color vision disorder QTL GWAS1611315 (human)) Homo sapiens

Symbol: GWAS1611315_H
Name: color vision disorder QTL GWAS1611315 (human)
RGD ID: 597515241
Trait: color vision disorder
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3813,308,771 - 3,308,772RGD_MAPPER_PIPELINEGRCh38
GRCh3713,225,335 - 3,225,336RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353101PRDM16PR/SET domain 16130692033438621Human
38647199LOC105378604uncharacterized LOC105378604133066533323497Human


Peak: (rs7526595)
Human AssemblyChrPosition (strand)Source
GRCh3813,308,771 - 3,308,772RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597515241GWAS1611315_Hcolor vision disorder QTL GWAS1611315 (human)0.000007color vision disorder133087713308772Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1611315_H GCST90301670 Color vision defects (Deutan-Protan) 31 Silk Road (founder/genetic isolate) cases, 483 Silk Road (founder/genetic isolate) controls T 0.989 0.000007 5.155 rs7526595 0.3491848 PMID:37359372
Database
Acc Id
Source(s)
GWAS Catalog GCST90301670 GWAS Catalog

Note Type Note Reference