GWAS1611240_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1611240_H (concentration of chylomicrons and extremely large VLDL particles measurement QTL GWAS1611240 (human)) Homo sapiens

Symbol: GWAS1611240_H
Name: concentration of chylomicrons and extremely large VLDL particles measurement QTL GWAS1611240 (human)
RGD ID: 597515166
Trait: concentration of chylomicrons and extremely large VLDL particles measurement
LOD Score: Not Available
P Value: 1.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,735,687 - 43,735,688RGD_MAPPER_PIPELINEGRCh38
GRCh371544,027,885 - 44,027,886RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1611240_HHumanconcentration of chylomicrons and extremely large VLDL particles measurement  IAGPrs139974673405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs139974673)
Human AssemblyChrPosition (strand)Source
GRCh381543,735,687 - 43,735,688RGD_MAPPER_PIPELINE


1 to 10 of 138 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597515166GWAS1611240_Hconcentration of chylomicrons and extremely large VLDL particles measurement QTL GWAS1611240 (human)1e-21concentration of chylomicrons and extremely large VLDL particles measurement 154373568743735688Human
407084615GWAS733591_Hobsolete_red blood cell distribution width QTL GWAS733591 (human)2e-14myeloid white cell count154373568743735688Human
597530779GWAS1626853_HX-24309 measurement QTL GWAS1626853 (human)6e-13X-24309 measurement154373568743735688Human
597455771GWAS1551845_Htriglycerides in medium HDL measurement QTL GWAS1551845 (human)8e-29blood VLDL phospholipid amount (VT:0010507)154373568743735688Human
597407644GWAS1503718_Htriglycerides in very small VLDL measurement QTL GWAS1503718 (human)1e-47triglycerides in very small VLDL measurementblood very low density lipoprotein triglyceride level (CMO:0002688)154373568743735688Human
407382849GWAS1031825_Hobsolete_red blood cell distribution width QTL GWAS1031825 (human)2e-17low density lipoprotein cholesterol measurement154373568743735688Human
597459094GWAS1555168_Hcholesterol esters in large VLDL measurement QTL GWAS1555168 (human)4e-26cholesterol esters in large VLDL measurement154373568743735688Human
597489302GWAS1585376_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1585376 (human)9e-10total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154373568743735688Human
597409175GWAS1505249_Htriglyceride measurement, phospholipid measurement QTL GWAS1505249 (human)5e-29triglyceride measurement, phospholipid measurementblood triglyceride level (CMO:0000118)154373568743735688Human
597456785GWAS1552859_Hfree cholesterol:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS1552859 (human)5e-18free cholesterol:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)154373568743735688Human

1 to 10 of 138 rows


1 to 20 of 235 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1611240_H GCST90269578 Concentration of chylomicrons and extremely large VLDL particles (UKB data field 23481) 88,329 European ancestry individuals C 0.0257288 1E-21 21 rs139974673 0.138167 concentration of chylomicrons and extremely large VLDL particles measurement (EFO:0022260)
 PMID:36764567
GWAS1703202_H GCST90002338 Mean corpuscular volume 696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals C 0.0253398 3E-16 15.523 rs139974673 N/A erythrocyte volume (OBA:0003460)
 PMID:32888493
GWAS1706022_H GCST90002407 White blood cell count 408,112 British individuals C 0.0255840000000001 2E-9 8.699 rs139974673 0.041895587 leukocyte quantity (OBA:VT0000217)
 PMID:32888494
GWAS1652104_H GCST90475159 Body mass index (BMI, minimum, inv-normal transformed) 424,217 European ancestry individuals T 0.9724 3E-17 16.523 rs139974673 0.07309 body mass index (EFO:0004340)
 PMID:39024449
GWAS1652326_H GCST90475156 Body mass index (BMI, mean, inv-normal transformed) 424,221 European ancestry individuals T 0.9724 6E-26 25.222 rs139974673 0.09466 body mass index (EFO:0004340)
 PMID:39024449
GWAS1721680_H GCST90016666 Liver volume 32,860 European ancestry individuals ? NR 5E-21 20.302 rs139974673 0.214 liver volume (OBA:2050033)
 PMID:34128465
GWAS1724232_H GCST007070 White blood cell count approximately 444,000 European ancestry individuals ? NR 2E-10 9.699 rs139974673 N/A leukocyte quantity (OBA:VT0000217)
 PMID:30595370
GWAS1662381_H GCST90476466 Weight (minimum, inv-normal transformed) 425,537 European ancestry individuals T 0.9724 1E-20 20 rs139974673 0.07966 body weight (EFO:0004338)
 PMID:39024449
GWAS1680496_H GCST90476463 Weight (mean, inv-normal transformed) 425,535 European ancestry individuals T 0.9724 5E-30 29.302 rs139974673 0.1008 body weight (EFO:0004338)
 PMID:39024449
GWAS1674143_H GCST90480651 platelet count (mean, inv-norm transformed) 114,731 African American or Afro-Caribbean individuals, 55,759 Hispanic or Latin American individuals, 5,948 East Asian ancestry individuals, 407,021 European ancestry individuals T 0.9776 4E-35 34.398 rs139974673 0.1422 platelet count (EFO:0004309)
 PMID:39024449
GWAS1737644_H GCST90002374 White blood cell count 562,243 European ancestry individuals C 0.026259 2E-14 13.699 rs139974673 0.044688 myeloid leukocyte count (OBA:2045223)
 PMID:32888493
GWAS1738293_H GCST90002378 White blood cell count 746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals C 0.0255251 4E-12 11.398 rs139974673 N/A myeloid leukocyte count (OBA:2045223)
 PMID:32888493
None Available GCST90479505 Albumin (minimum, inv-norm transformed) 110,337 African American or Afro-Caribbean individuals, 53,293 Hispanic or Latin American individuals, 5,708 East Asian ancestry individuals, 372,982 European ancestry individuals T 0.9777 5E-30 29.302 rs139974673 0.09489 serum albumin amount (OBA:2050068)
 PMID:39024449
GWAS1745461_H GCST90479504 Albumin (mean, inv-norm transformed) 110,320 African American or Afro-Caribbean individuals, 53,287 Hispanic or Latin American individuals, 5,707 East Asian ancestry individuals, 372,962 European ancestry individuals T 0.9777 3E-43 42.523 rs139974673 0.1212 serum albumin amount (OBA:2050068)
 PMID:39024449
GWAS1745864_H GCST90479503 Albumin (maximum, inv-norm transformed) 110,326 African American or Afro-Caribbean individuals, 53,290 Hispanic or Latin American individuals, 5,708 East Asian ancestry individuals, 372,948 European ancestry individuals T 0.9777 2E-41 40.699 rs139974673 0.1175 serum albumin amount (OBA:2050068)
 PMID:39024449
None Available GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals T 0.974088 3E-17 16.523 rs139974673 0.109138 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748329_H GCST90092998 Free cholesterol levels in VLDL 115,082 European ancestry individuals T 0.974088 1E-15 15 rs139974673 0.103299 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748375_H GCST90093050 Triglyceride levels in chylomicrons and extremely large VLDL 115,082 European ancestry individuals T 0.974088 2E-21 20.699 rs139974673 0.119139 triglyceride measurement (EFO:0004530)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1750080_H GCST90093036 Phospholipid levels in very small VLDL 115,082 European ancestry individuals T 0.974088 3E-15 14.523 rs139974673 0.100688 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750191_H GCST90093035 Concentration of very small VLDL particles 115,082 European ancestry individuals T 0.974088 1E-8 8 rs139974673 0.0732214 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
1 to 20 of 235 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90269578 GWAS Catalog

Note Type Note Reference