GWAS1609739_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1609739_H (complex trait QTL GWAS1609739 (human)) Homo sapiens

Symbol: GWAS1609739_H
Name: complex trait QTL GWAS1609739 (human)
RGD ID: 597513665
Trait: complex trait
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,290,095 - 58,290,096RGD_MAPPER_PIPELINEGRCh38
GRCh371558,582,294 - 58,582,295RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1609739_HHumancomplex trait  IAGPrs938509405850206 GWAS_CATALOGPMID:37277458

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs938509)
Human AssemblyChrPosition (strand)Source
GRCh381558,290,095 - 58,290,096RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597488047GWAS1584121_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS1584121 (human)8e-09blood lipid amount (VT:0003949)155829009558290096Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597513665GWAS1609739_Hcomplex trait QTL GWAS1609739 (human)3e-08complex trait155829009558290096Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597487778GWAS1583852_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS1583852 (human)5e-08blood lipid amount (VT:0003949)155829009558290096Human
597504659GWAS1600733_Hhigh density lipoprotein cholesterol measurement QTL GWAS1600733 (human)4e-12high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155829009558290096Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1609739_H GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 3E-8 7.523 rs938509 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1583852_H GCST90024204 Lysophosphatidylethanolamine (16:0) [sn1] levels 4,492 European ancestry individuals T NR 5E-8 7.302 rs938509 0.14 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
GWAS1584121_H GCST90024205 Lysophosphatidylethanolamine (16:0) [sn2] levels 4,492 European ancestry individuals T NR 8E-9 8.097 rs938509 0.148 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
GWAS1600733_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 4E-12 11.398 rs938509 0.020984 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90270119 GWAS Catalog

Note Type Note Reference