GWAS1606795_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1606795_H (leprosy QTL GWAS1606795 (human)) Homo sapiens

Symbol: GWAS1606795_H
Name: leprosy QTL GWAS1606795 (human)
RGD ID: 597510721
Trait: leprosy
LOD Score: Not Available
P Value: 1.0E-5
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,849,634 - 16,849,635RGD_MAPPER_PIPELINEGRCh38
GRCh37117,176,129 - 17,176,130RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1606795_HHumanleprosy  IAGPrs201434151405850206 GWAS_CATALOGPMID:36121873

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1606795_HHumanleprosy  IAGPrs201434151405850206 GWAS_CATALOGPMID:36121873

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs201434151)
Human AssemblyChrPosition (strand)Source
GRCh38116,849,634 - 16,849,635RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597510721GWAS1606795_Hleprosy QTL GWAS1606795 (human)0.00001leprosy11684963416849635Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1606795_H GCST90129399 Leprosy 284 Sub-Saharan African ancestry cases, 328 Sub-Saharan African ancestry controls CT NR 0.00001 5 rs201434151 2.0 leprosy (EFO:0001054)
 PMID:36121873
Database
Acc Id
Source(s)
GWAS Catalog GCST90129399 GWAS Catalog

Note Type Note Reference