GWAS1599141_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1599141_H (testosterone measurement QTL GWAS1599141 (human)) Homo sapiens

Symbol: GWAS1599141_H
Name: testosterone measurement QTL GWAS1599141 (human)
RGD ID: 597503067
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 3.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,078,920 - 40,078,921RGD_MAPPER_PIPELINEGRCh38
GRCh371540,371,121 - 40,371,122RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1599141_HHumanserum testosterone level  IAGPrs3923235405850206 GWAS_CATALOGPMID:34321204

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1599141_HHumantestosterone measurement  IAGPrs3923235405850206 GWAS_CATALOGPMID:34321204

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38648011LOC105370787uncharacterized LOC105370787154007428740081796Human


Peak: (rs3923235)
Human AssemblyChrPosition (strand)Source
GRCh381540,078,920 - 40,078,921RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597506712GWAS1602786_Htestosterone measurement QTL GWAS1602786 (human)4e-09testosterone measurementserum testosterone level (CMO:0000568)154007892040078921Human
597503067GWAS1599141_Htestosterone measurement QTL GWAS1599141 (human)3e-15testosterone measurementserum testosterone level (CMO:0000568)154007892040078921Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1599141_H GCST90027096 Total testosterone levels 158,000 British ancestry women G 0.29 3E-15 14.523 rs3923235 0.03 testosterone measurement (EFO:0004908)
 PMID:34321204
GWAS1602786_H GCST90027084 Bioavailable testosterone levels 158,000 British ancestry women G 0.29 4E-9 8.398 rs3923235 0.01 testosterone measurement (EFO:0004908)
 PMID:34321204
GWAS1603852_H GCST90027088 Free testosterone levels 158,000 British ancestry women G 0.29 3E-9 8.523 rs3923235 0.0 testosterone measurement (EFO:0004908)
 PMID:34321204
Database
Acc Id
Source(s)
GWAS Catalog GCST90027096 GWAS Catalog

Note Type Note Reference