GWAS1597996_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1597996_H (high density lipoprotein cholesterol measurement QTL GWAS1597996 (human)) Homo sapiens

Symbol: GWAS1597996_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1597996 (human)
RGD ID: 597501922
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,394,210 - 58,394,211RGD_MAPPER_PIPELINEGRCh38
GRCh371558,686,409 - 58,686,410RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1597996_HHumanblood high density lipoprotein cholesterol level  IAGPrs118078695405850206 GWAS_CATALOGPMID:36376304

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1597996_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs118078695405850206 GWAS_CATALOGPMID:36376304

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs118078695)
Human AssemblyChrPosition (strand)Source
GRCh381558,394,210 - 58,394,211RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597504863GWAS1600937_Hlow density lipoprotein cholesterol measurement QTL GWAS1600937 (human)4e-20low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155839421058394211Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597485465GWAS1581539_Hphosphatidylethanolamine measurement QTL GWAS1581539 (human)1e-08phosphatidylethanolamine measurement155839421058394211Human
597489204GWAS1585278_Hphosphatidylethanolamine measurement QTL GWAS1585278 (human)2e-08phosphatidylethanolamine measurement155839421058394211Human
597485760GWAS1581834_Hphosphatidylethanolamine measurement QTL GWAS1581834 (human)4e-08phosphatidylethanolamine measurement155839421058394211Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597488962GWAS1585036_Hphosphatidylethanolamine measurement QTL GWAS1585036 (human)4e-09phosphatidylethanolamine measurement155839421058394211Human
597501922GWAS1597996_Hhigh density lipoprotein cholesterol measurement QTL GWAS1597996 (human)3e-11high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155839421058394211Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1597996_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 3E-11 10.523 rs118078695 0.074247 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
GWAS1581539_H GCST90024371 Phosphatidylethanolamine (18:0_22:5) (n3) levels 4,492 European ancestry individuals A NR 1E-8 8 rs118078695 0.646 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581834_H GCST90024379 Phosphatidylethanolamine (38:5) (a) levels 4,492 European ancestry individuals A NR 4E-8 7.398 rs118078695 0.623 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1585036_H GCST90024969 Phosphatidylethanolamine (16:0_20:5) levels 6,057 European ancestry individuals A NR 4E-9 8.398 rs118078695 N/A phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1585278_H GCST90024357 Phosphatidylethanolamine (16:0_20:5) levels 4,492 European ancestry individuals A NR 2E-8 7.699 rs118078695 0.637 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1600937_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 4E-20 19.398 rs118078695 0.054362 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90179147 GWAS Catalog

Note Type Note Reference