GWAS1597953_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1597953_H (diet measurement QTL GWAS1597953 (human)) Homo sapiens

Symbol: GWAS1597953_H
Name: diet measurement QTL GWAS1597953 (human)
RGD ID: 597501879
Trait: eating behavior trait   (VT:0001431)    
Measurement Type: food intake measurement   (CMO:0000772)    
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381535,635,454 - 35,635,455RGD_MAPPER_PIPELINEGRCh38
GRCh371535,927,655 - 35,927,656RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1597953_HHumanfood intake measurement  IAGPrs956362405850206 GWAS_CATALOGPMID:32193382

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1597953_HHumaneating behavior trait  IAGPrs956362405850206Based on the EFO term IDGWAS_CATALOGPMID:32193382

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1597953_HHumandiet measurement  IAGPrs956362405850206 GWAS_CATALOGPMID:32193382

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6770716DPH6-DTDPH6 divergent transcript153554619535859001Human


Peak: (rs956362)
Human AssemblyChrPosition (strand)Source
GRCh381535,635,454 - 35,635,455RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597501879GWAS1597953_Hdiet measurement QTL GWAS1597953 (human)3e-09eating behavior trait (VT:0001431)food intake measurement (CMO:0000772)153563545435635455Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1597953_H GCST90133006 Principal component-derived dietary pattern 1 449,210 European ancestry individuals A 0.788344 3E-9 8.523 rs956362 0.0340591 diet measurement (EFO:0008111)
 PMID:32193382
Database
Acc Id
Source(s)
GWAS Catalog GCST90133006 GWAS Catalog

Note Type Note Reference