GWAS1590419_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1590419_H (serum alanine aminotransferase measurement QTL GWAS1590419 (human)) Homo sapiens

Symbol: GWAS1590419_H
Name: serum alanine aminotransferase measurement QTL GWAS1590419 (human)
RGD ID: 597494345
Trait: serum alanine aminotransferase measurement
Measurement Type: serum alanine aminotransferase activity level   (CMO:0000575)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381252,901,610 - 52,901,611RGD_MAPPER_PIPELINEGRCh38
GRCh371253,295,394 - 53,295,395RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1590419_HHumanserum alanine aminotransferase activity level  IAGPrs1799872405850206 GWAS_CATALOGPMID:36333282

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1590419_HHumanserum alanine aminotransferase measurement  IAGPrs1799872405850206 GWAS_CATALOGPMID:36333282

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735536KRT8keratin 8125289719152949860Human
155763584LOC127824238H3K4me1 hESC enhancer GRCh37_chr12:53295217-53296061125290143352902277Human


Peak: (rs1799872)
Human AssemblyChrPosition (strand)Source
GRCh381252,901,610 - 52,901,611RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597494345GWAS1590419_Hserum alanine aminotransferase measurement QTL GWAS1590419 (human)3e-10serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)125290161052901611Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1590419_H GCST90244009 Alanine aminotransferase levels 288,127 East Asian ancestry individuals C 0.6384 3E-10 9.523 rs1799872 0.0187 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:36333282
Database
Acc Id
Source(s)
GWAS Catalog GCST90244009 GWAS Catalog

Note Type Note Reference