GWAS1588904_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1588904_H (COVID-19 QTL GWAS1588904 (human)) Homo sapiens

Symbol: GWAS1588904_H
Name: COVID-19 QTL GWAS1588904 (human)
RGD ID: 597492830
Trait: COVID-19
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381112,392,939 - 112,392,940RGD_MAPPER_PIPELINEGRCh38
GRCh371112,935,561 - 112,935,562RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1588904_HHumanCOVID-19  IAGPrs146092491405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:35224516


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1607020CTTNBP2NLCTTNBP2 N-terminal like1112391087112461164Human


Peak: (rs146092491)
Human AssemblyChrPosition (strand)Source
GRCh381112,392,939 - 112,392,940RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597492830GWAS1588904_HCOVID-19 QTL GWAS1588904 (human)0.000007COVID-191112392939112392940Human
1300021BP45_HBlood pressure QTL 45 (human)1.770.00218Blood pressuresystolic1103389009129389009Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1588904_H GCST90104719 COVID-19 7,784 European ancestry male cases, 202,167 European ancestry male controls A 0.03024312 0.000007 5.155 rs146092491 0.22504 PMID:35224516
Database
Acc Id
Source(s)
GWAS Catalog GCST90104719 GWAS Catalog

Note Type Note Reference