GWAS1588773_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1588773_H (complex trait QTL GWAS1588773 (human)) Homo sapiens

Symbol: GWAS1588773_H
Name: complex trait QTL GWAS1588773 (human)
RGD ID: 597492699
Trait: complex trait
LOD Score: Not Available
P Value: 1.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,416,982 - 58,416,983RGD_MAPPER_PIPELINEGRCh38
GRCh371558,709,181 - 58,709,182RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1588773_HHumancomplex trait  IAGPrs60315394405850206 GWAS_CATALOGPMID:37277458

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs60315394)
Human AssemblyChrPosition (strand)Source
GRCh381558,416,982 - 58,416,983RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597492699GWAS1588773_Hcomplex trait QTL GWAS1588773 (human)1e-12complex trait155841698258416983Human
597531483GWAS1627557_H1-eicosapentaenoyl-GPE (20:5) measurement QTL GWAS1627557 (human)2e-091-eicosapentaenoyl-GPE (20:5) measurement155841698358416984Human
597490842GWAS1586916_Hsexual dimorphism measurement QTL GWAS1586916 (human)2e-20sexual dimorphism measurement155841698358416984Human
597529338GWAS1625412_Hsexual dimorphism measurement QTL GWAS1625412 (human)9e-21sexual dimorphism measurement155841698358416984Human
597512357GWAS1608431_Hcomplex trait QTL GWAS1608431 (human)1e-21complex trait155841698258416983Human
597528001GWAS1624075_Hlevel of Phosphatidylethanolamine (16:0_20:4) in blood serum QTL GWAS1624075 (human)2e-17level of Phosphatidylethanolamine (16:0_20:4) in blood serum155841698258416983Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1588773_H GCST90270117 Multi-trait sum score 161,906 European ancestry females ? NR 1E-12 12 rs60315394 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1608431_H GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 1E-21 21 rs60315394 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1624075_H GCST90244478 Phosphatidylethanolamine (16:0_20:4) levels 4,642 European ancestry women T NR 2E-17 16.699 rs60315394 0.2324 level of Phosphatidylethanolamine (16:0_20:4) in blood serum (OBA:2045137)
 PMID:36193934
Database
Acc Id
Source(s)
GWAS Catalog GCST90270117 GWAS Catalog

Note Type Note Reference