GWAS1588162_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1588162_H (1-stearoylglycerophosphoethanolamine measurement QTL GWAS1588162 (human)) Homo sapiens

Symbol: GWAS1588162_H
Name: 1-stearoylglycerophosphoethanolamine measurement QTL GWAS1588162 (human)
RGD ID: 597492088
Trait: 1-stearoylglycerophosphoethanolamine measurement
LOD Score: Not Available
P Value: 8.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,438,299 - 58,438,300RGD_MAPPER_PIPELINEGRCh38
GRCh371558,730,498 - 58,730,499RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1588162_HHuman1-stearoylglycerophosphoethanolamine measurement  IAGPrs588136405850206 GWAS_CATALOGPMID:24816252

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736877LIPClipase C, hepatic type155843199158569844Human
11084824LIPC-AS1LIPC antisense RNA 1155843490158498735Human


Peak: (rs588136)
Human AssemblyChrPosition (strand)Source
GRCh381558,438,299 - 58,438,300RGD_MAPPER_PIPELINE


1 to 10 of 96 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597508124GWAS1604198_H1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) measurement QTL GWAS1604198 (human)1e-11glycerophosphocholine amount (VT:0011004)155843829958438300Human
597458207GWAS1554281_Hcholesterol:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS1554281 (human)5e-238cholesterol:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155843829958438300Human
597488153GWAS1584227_Hlow density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio QTL GWAS1584227 (human)5e-94low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)155843829958438300Human
597392286GWAS1488360_Hserum metabolite measurement QTL GWAS1488360 (human)2e-13serum metabolite measurement155843829958438300Human
407217475GWAS866451_H1-margaroyl-2-oleoyl-GPC (17:0/18:1) measurement QTL GWAS866451 (human)8e-191-margaroyl-2-oleoyl-GPC (17:0/18:1) measurement155843829958438300Human
596972957GWAS1092476_H1-margaroyl-2-oleoyl-GPC (17:0/18:1) measurement QTL GWAS1092476 (human)8e-191,2-dipalmitoyl-GPC (16:0/16:0) measurement155843829958438300Human
596970265GWAS1089784_Hlow density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio QTL GWAS1089784 (human)5e-94low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio155843829958438300Human
597390998GWAS1487072_Hserum metabolite measurement QTL GWAS1487072 (human)1e-38serum metabolite measurement155843829958438300Human
597390614GWAS1486688_Hserum metabolite measurement QTL GWAS1486688 (human)2e-08serum metabolite measurement155843829958438300Human
596972955GWAS1092474_Hcoronary artery disease QTL GWAS1092474 (human)7e-10coronary artery disease155843829958438300Human

1 to 10 of 96 rows


1 to 20 of 43 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1588162_H GCST90243780 1-stearoylglycerophosphoethanolamine levels 7,369 European ancestry individuals T 0.8 8E-12 11.097 rs588136 0.029 1-stearoylglycerophosphoethanolamine measurement (EFO:0021093)
 PMID:24816252
GWAS1113581_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 3E-10 9.523 rs588136 0.05016212 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1113586_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 1E-17 17 rs588136 0.067786194 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1738571_H GCST90091537 Fasting mean diameter of LDL particles null T 0.794244825 1E-9 9 rs588136 0.157277 LDL particle size (OBA:2050113)
 PMID:34610981
GWAS1755943_H GCST90302151 Total cholesterol to total lipids ratio in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.7766 5E-80 79.302 rs588136 0.0881 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1459401_H GCST004237 Triglyceride levels 28,183 East Asian ancestry individuals, 177,861 European ancestry individuals T 0.794 2E-27 26.699 rs588136 0.0495 triglyceride measurement (EFO:0004530)
 PMID:28334899
GWAS1470256_H GCST002174 Lipid traits 1,782 Filipino ancestry mothers ? 0.69 2E-12 11.699 rs588136 0.05 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:24023260
GWAS1486060_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 1E-48 48 rs588136 0.10144133 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1486688_H GCST009242 Serum metabolite levels 6,263 Finnish ancestry men ? NR 2E-8 7.699 rs588136 0.08324751 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1487072_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 1E-38 38 rs588136 0.098011315 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1488360_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 2E-13 12.699 rs588136 0.06171079 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1488700_H GCST009242 Serum metabolite levels 6,263 Finnish ancestry men ? NR 2E-19 18.699 rs588136 0.112084754 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1488713_H GCST009242 Serum metabolite levels 6,263 Finnish ancestry men ? NR 5E-35 34.302 rs588136 0.18073395 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1488715_H GCST009242 Serum metabolite levels 6,263 Finnish ancestry men ? NR 9E-30 29.046 rs588136 0.1656229 serum metabolite measurement (EFO:0005653)
 PMID:31636271
None Available GCST009242 Serum metabolite levels 6,263 Finnish ancestry men ? NR 2E-13 12.699 rs588136 0.10789438 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1490328_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 2E-20 19.699 rs588136 0.07748729 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1490330_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 1E-63 63 rs588136 0.19771537 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1490332_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 2E-55 54.699 rs588136 0.18485378 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1504792_H GCST90132314 Coronary artery disease 181,522 European ancestry, unknown cases, 984,168 European ancestry, unknown controls T 0.781 7E-10 9.155 rs588136 0.964 coronary artery disease (EFO:0001645)
 PMID:36474045
GWAS1521486_H GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 4E-11 10.398 rs588136 0.04 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
1 to 20 of 43 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90243780 GWAS Catalog

Note Type Note Reference