GWAS1588027_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1588027_H (complex trait QTL GWAS1588027 (human)) Homo sapiens

Symbol: GWAS1588027_H
Name: complex trait QTL GWAS1588027 (human)
RGD ID: 597491953
Trait: complex trait
LOD Score: Not Available
P Value: 8.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,428,969 - 58,428,970RGD_MAPPER_PIPELINEGRCh38
GRCh371558,721,168 - 58,721,169RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1588027_HHumancomplex trait  IAGPrs11857386405850206 GWAS_CATALOGPMID:37277458

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11857386)
Human AssemblyChrPosition (strand)Source
GRCh381558,428,969 - 58,428,970RGD_MAPPER_PIPELINE


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597427708GWAS1523782_Hphosphatidylcholine measurement QTL GWAS1523782 (human)2e-21phosphatidylcholine measurement155842896958428970Human
597425400GWAS1521474_Hphosphatidylethanolamine measurement QTL GWAS1521474 (human)2e-11phosphatidylethanolamine measurement155842896958428970Human
597418559GWAS1514633_Hphosphatidylcholine measurement QTL GWAS1514633 (human)2e-34phosphatidylcholine measurement155842896958428970Human
597428377GWAS1524451_Hphosphatidylcholine measurement QTL GWAS1524451 (human)5e-16phosphatidylcholine measurement155842896958428970Human
597491953GWAS1588027_Hcomplex trait QTL GWAS1588027 (human)8e-16complex trait155842896958428970Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597425737GWAS1521811_Hphosphatidylethanolamine measurement QTL GWAS1521811 (human)2e-15phosphatidylethanolamine measurement155842896958428970Human
597425352GWAS1521426_Hphosphatidylethanolamine measurement QTL GWAS1521426 (human)6e-28phosphatidylethanolamine measurement155842896958428970Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597416931GWAS1513005_Hphosphatidylcholine measurement QTL GWAS1513005 (human)5e-24phosphatidylcholine measurement155842896958428970Human

1 to 10 of 14 rows


1 to 15 of 15 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1588027_H GCST90270117 Multi-trait sum score 161,906 European ancestry females ? NR 8E-16 15.097 rs11857386 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1513005_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 5E-24 23.302 rs11857386 0.123094 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514633_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 2E-34 33.699 rs11857386 0.144892 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514960_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 3E-29 28.523 rs11857386 0.129464 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1521426_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals G NR 6E-28 27.222 rs11857386 0.125676 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521474_H GCST90060313 Phosphatidylethanolamine_38:5_[M-H]1- levels 13,814 British ancestry individuals G NR 2E-11 10.699 rs11857386 0.0670089 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521710_H GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 2E-27 26.699 rs11857386 0.1261 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521811_H GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals G NR 2E-15 14.699 rs11857386 0.0914188 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060738 Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals C NR 2E-27 26.699 rs11857386 0.073 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 2E-27 26.699 rs11857386 0.0879 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals G NR 2E-27 26.699 rs11857386 0.0788 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1523782_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 2E-21 20.699 rs11857386 0.115107 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524451_H GCST90060371 Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 5E-16 15.302 rs11857386 0.118011 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524620_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals G NR 7E-35 34.155 rs11857386 0.143118 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1587757_H GCST90270118 Multi-trait sex score 141,980 European ancestry males ? NR 5E-8 7.302 rs11857386 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
1 to 15 of 15 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90270117 GWAS Catalog

Note Type Note Reference