GWAS1587958_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1587958_H (JT interval QTL GWAS1587958 (human)) Homo sapiens

Symbol: GWAS1587958_H
Name: JT interval QTL GWAS1587958 (human)
RGD ID: 597491884
Trait: heart electrical impulse conduction trait   (VT:2000017)    
Measurement Type: heart electrical conduction measurement   (CMO:0000230)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,652,040 - 10,652,041RGD_MAPPER_PIPELINEGRCh38
GRCh37110,712,097 - 10,712,098RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1587958_HHumanheart electrical conduction measurement  IAGPrs284295405850206 GWAS_CATALOGPMID:36050321

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1587958_HHumanheart electrical impulse conduction trait  IAGPrs284295405850206 GWAS_CATALOGPMID:36050321

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1587958_HHumanJT interval  IAGPrs284295405850206 GWAS_CATALOGPMID:36050321

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606535CASZ1castor zinc finger 111063660410796646Human


Peak: (rs284295)
Human AssemblyChrPosition (strand)Source
GRCh38110,652,040 - 10,652,041RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597491884GWAS1587958_HJT interval QTL GWAS1587958 (human)4e-08heart electrical impulse conduction trait (VT:2000017)heart electrical conduction measurement (CMO:0000230)11065204010652041Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1587958_H GCST90179158 JT interval 212,199 European ancestry individuals A 0.8083 4E-8 7.398 rs284295 0.0218 JT interval (EFO:0007885)
 PMID:36050321
Database
Acc Id
Source(s)
GWAS Catalog GCST90179158 GWAS Catalog

Note Type Note Reference