GWAS1584587_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1584587_H (body mass index QTL GWAS1584587 (human)) Homo sapiens

Symbol: GWAS1584587_H
Name: body mass index QTL GWAS1584587 (human)
RGD ID: 597488513
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 9.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38119,599,265 - 19,599,266RGD_MAPPER_PIPELINEGRCh38
GRCh37119,925,759 - 19,925,760RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1584587_HHumanbody mass index (BMI)  IAGPrs12024554405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1584587_HHumanbody mass index  IAGPrs12024554405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603802MICOS10mitochondrial contact site and cristae organizing system subunit 1011959697919629820Human
7243405MICOS10-NBL1MICOS10-NBL1 readthrough11959697919658452Human


Peak: (rs12024554)
Human AssemblyChrPosition (strand)Source
GRCh38119,599,265 - 19,599,266RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597467164GWAS1563238_Hwaist-hip ratio QTL GWAS1563238 (human)1e-10waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)11959926519599266Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597488513GWAS1584587_Hbody mass index QTL GWAS1584587 (human)9e-09body mass indexbody mass index (BMI) (CMO:0000105)11959926519599266Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1584587_H GCST90018947 Body mass index 359,983 European ancestry individuals, 163,835 East Asian ancestry individuals T NR 9E-9 8.046 rs12024554 0.0122 body mass index (EFO:0004340)
 PMID:34594039
GWAS1563238_H GCST008996 Waist-hip ratio 697,734 European ancestry individuals T 0.2346 1E-10 10 rs12024554 0.0149 waist-hip ratio (EFO:0004343)
 PMID:30239722
Database
Acc Id
Source(s)
GWAS Catalog GCST90018947 GWAS Catalog

Note Type Note Reference