GWAS1582639_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1582639_H (phosphatidylethanolamine measurement QTL GWAS1582639 (human)) Homo sapiens

Symbol: GWAS1582639_H
Name: phosphatidylethanolamine measurement QTL GWAS1582639 (human)
RGD ID: 597486565
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,394,841 - 58,394,842RGD_MAPPER_PIPELINEGRCh38
GRCh371558,687,040 - 58,687,041RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1582639_HHumanphosphatidylethanolamine measurement  IAGPrs75663614405850206 GWAS_CATALOGPMID:35668104

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs75663614)
Human AssemblyChrPosition (strand)Source
GRCh381558,394,841 - 58,394,842RGD_MAPPER_PIPELINE


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597482685GWAS1578759_Hphosphatidylethanolamine measurement QTL GWAS1578759 (human)1e-08phosphatidylethanolamine measurement155839484158394842Human
597485466GWAS1581540_Hphosphatidylethanolamine measurement QTL GWAS1581540 (human)9e-11phosphatidylethanolamine measurement155839484158394842Human
597488052GWAS1584126_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS1584126 (human)4e-11blood lipid amount (VT:0003949)155839484158394842Human
597488343GWAS1584417_Hlysophosphatidylethanolamine 18:0 measurement QTL GWAS1584417 (human)1e-12blood lipid amount (VT:0003949)155839484158394842Human
597487479GWAS1583553_Hlysophosphatidylethanolamine 18:0 measurement QTL GWAS1583553 (human)1e-13blood lipid amount (VT:0003949)155839484158394842Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597486577GWAS1582651_Hphosphatidylethanolamine measurement QTL GWAS1582651 (human)0.000001phosphatidylethanolamine measurement155839484158394842Human
597488370GWAS1584444_Hphosphatidylethanolamine measurement QTL GWAS1584444 (human)0.000006phosphatidylethanolamine measurement155839484158394842Human
597488968GWAS1585042_Hphosphatidylethanolamine measurement QTL GWAS1585042 (human)3e-14phosphatidylethanolamine measurement155839484158394842Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human

1 to 10 of 16 rows


1 to 17 of 17 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1582639_H GCST90024359 Phosphatidylethanolamine (16:1_18:2) levels 4,492 European ancestry individuals C NR 0.000005 5.302 rs75663614 0.291 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1522414_H GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 3E-10 9.523 rs75663614 0.0779 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1578759_H GCST90024589 Total Lysophosphatidylethanolamine levels 4,492 European ancestry individuals C NR 1E-8 8 rs75663614 0.363 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1580976_H GCST90024357 Phosphatidylethanolamine (16:0_20:5) levels 4,492 European ancestry individuals C NR 0.000003 5.523 rs75663614 0.297 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581262_H GCST90024369 Phosphatidylethanolamine (18:0_20:4) levels 4,492 European ancestry individuals C NR 2E-10 9.699 rs75663614 0.404 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581540_H GCST90024371 Phosphatidylethanolamine (18:0_22:5) (n3) levels 4,492 European ancestry individuals C NR 9E-11 10.046 rs75663614 0.412 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581835_H GCST90024379 Phosphatidylethanolamine (38:5) (a) levels 4,492 European ancestry individuals C NR 1E-9 9 rs75663614 0.386 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581843_H GCST90024380 Phosphatidylethanolamine (38:5) (b) levels 4,492 European ancestry individuals C NR 4E-10 9.398 rs75663614 0.398 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1582651_H GCST90024361 Phosphatidylethanolamine (17:0_18:1) levels 4,492 European ancestry individuals C NR 0.000001 6 rs75663614 0.308 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1583553_H GCST90024209 Lysophosphatidylethanolamine (18:0) [sn2] levels 4,492 European ancestry individuals C NR 1E-13 13 rs75663614 0.474 lysophosphatidylethanolamine 18:0 measurement (EFO:0010367)
 PMID:35668104
None Available GCST90024204 Lysophosphatidylethanolamine (16:0) [sn1] levels 4,492 European ancestry individuals C NR 2E-10 9.699 rs75663614 0.406 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
GWAS1584126_H GCST90024205 Lysophosphatidylethanolamine (16:0) [sn2] levels 4,492 European ancestry individuals C NR 4E-11 10.398 rs75663614 0.421 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
GWAS1584417_H GCST90024208 Lysophosphatidylethanolamine (18:0) [sn1] levels 4,492 European ancestry individuals C NR 1E-12 12 rs75663614 0.452 lysophosphatidylethanolamine 18:0 measurement (EFO:0010367)
 PMID:35668104
GWAS1584444_H GCST90024353 Phosphatidylethanolamine (16:0_18:3) (a) levels 4,492 European ancestry individuals C NR 0.000006 5.222 rs75663614 0.287 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024351 Phosphatidylethanolamine (16:0_18:1) levels 4,492 European ancestry individuals C NR 0.000006 5.222 rs75663614 0.288 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1585042_H GCST90024991 Phosphatidylethanolamine (38:5) (a) levels 6,057 European ancestry individuals C NR 3E-14 13.523 rs75663614 N/A phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024356 Phosphatidylethanolamine (16:0_20:4) levels 4,492 European ancestry individuals C NR 1E-8 8 rs75663614 0.361 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
1 to 17 of 17 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90024359 GWAS Catalog

Note Type Note Reference