GWAS1582637_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1582637_H (phosphatidylethanolamine measurement QTL GWAS1582637 (human)) Homo sapiens

Symbol: GWAS1582637_H
Name: phosphatidylethanolamine measurement QTL GWAS1582637 (human)
RGD ID: 597486563
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 1.0E-5
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,276,517 - 58,276,518RGD_MAPPER_PIPELINEGRCh38
GRCh371558,568,716 - 58,568,717RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1582637_HHumanphosphatidylethanolamine measurement  IAGPrs62001677405850206 GWAS_CATALOGPMID:35668104

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs62001677)
Human AssemblyChrPosition (strand)Source
GRCh381558,276,517 - 58,276,518RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597488638GWAS1584712_Hphosphatidylethanolamine measurement QTL GWAS1584712 (human)3e-09phosphatidylethanolamine measurement155827651758276518Human
597484888GWAS1580962_Hphosphatidylethanolamine measurement QTL GWAS1580962 (human)3e-08phosphatidylethanolamine measurement155827651758276518Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597487142GWAS1583216_Hphosphatidylethanolamine measurement QTL GWAS1583216 (human)1e-10phosphatidylethanolamine measurement155827651758276518Human
597486263GWAS1582337_Hphosphatidylethanolamine measurement QTL GWAS1582337 (human)2e-11phosphatidylethanolamine measurement155827651758276518Human
597485751GWAS1581825_Hphosphatidylethanolamine measurement QTL GWAS1581825 (human)2e-08phosphatidylethanolamine measurement155827651758276518Human
597485463GWAS1581537_Hphosphatidylethanolamine measurement QTL GWAS1581537 (human)6e-11phosphatidylethanolamine measurement155827651758276518Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597488369GWAS1584443_Hphosphatidylethanolamine measurement QTL GWAS1584443 (human)0.0000001phosphatidylethanolamine measurement155827651758276518Human
597486563GWAS1582637_Hphosphatidylethanolamine measurement QTL GWAS1582637 (human)0.00001phosphatidylethanolamine measurement155827651758276518Human

1 to 10 of 10 rows


1 to 9 of 9 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1582637_H GCST90024359 Phosphatidylethanolamine (16:1_18:2) levels 4,492 European ancestry individuals T NR 0.00001 5 rs62001677 0.128 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1580962_H GCST90024375 Phosphatidylethanolamine (18:1_18:2) levels 4,492 European ancestry individuals T NR 3E-8 7.523 rs62001677 0.162 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581537_H GCST90024371 Phosphatidylethanolamine (18:0_22:5) (n3) levels 4,492 European ancestry individuals T NR 6E-11 10.222 rs62001677 0.19 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581825_H GCST90024374 Phosphatidylethanolamine (18:1_18:1) levels 4,492 European ancestry individuals T NR 2E-8 7.699 rs62001677 0.161 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1582337_H GCST90024366 Phosphatidylethanolamine (18:0_18:2) levels 4,492 European ancestry individuals T NR 2E-11 10.699 rs62001677 0.195 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024361 Phosphatidylethanolamine (17:0_18:1) levels 4,492 European ancestry individuals T NR 2E-8 7.699 rs62001677 0.163 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1583216_H GCST90024365 Phosphatidylethanolamine (18:0_18:1) levels 4,492 European ancestry individuals T NR 1E-10 10 rs62001677 0.185 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1584443_H GCST90024353 Phosphatidylethanolamine (16:0_18:3) (a) levels 4,492 European ancestry individuals T NR 1E-7 7 rs62001677 0.154 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1584712_H GCST90024351 Phosphatidylethanolamine (16:0_18:1) levels 4,492 European ancestry individuals T NR 3E-9 8.523 rs62001677 0.172 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
1 to 9 of 9 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90024359 GWAS Catalog

Note Type Note Reference