GWAS1582187_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1582187_H (lymphocyte count QTL GWAS1582187 (human)) Homo sapiens

Symbol: GWAS1582187_H
Name: lymphocyte count QTL GWAS1582187 (human)
RGD ID: 597486113
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,478,324 - 58,478,325RGD_MAPPER_PIPELINEGRCh38
GRCh371558,770,523 - 58,770,524RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1582187_HHumanblood lymphocyte count  IAGPrs7161799405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1582187_HHumanlymphocyte count  IAGPrs7161799405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736877LIPClipase C, hepatic type155843199158569844Human
11084824LIPC-AS1LIPC antisense RNA 1155843490158498735Human


Peak: (rs7161799)
Human AssemblyChrPosition (strand)Source
GRCh381558,478,324 - 58,478,325RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597373290GWAS1469364_Hlymphocyte count QTL GWAS1469364 (human)2e-19lymphocyte countblood lymphocyte count (CMO:0000031)155847832458478325Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597366654GWAS1462728_Hlymphocyte count QTL GWAS1462728 (human)3e-21lymphocyte countblood lymphocyte count (CMO:0000031)155847832458478325Human
597580856GWAS1637716_Hlymphocyte count QTL GWAS1637716 (human)2e-12lymphocyte countblood lymphocyte count (CMO:0000031)155847832458478325Human
597390835GWAS1486909_Heosinophil count QTL GWAS1486909 (human)4e-09eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)155847832458478325Human
597597172GWAS1654032_Hlymphocyte count QTL GWAS1654032 (human)4e-13lymphocyte countblood lymphocyte count (CMO:0000031)155847832458478325Human
597018729GWAS1114803_Heosinophil count QTL GWAS1114803 (human)9e-11eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)155847832458478325Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597486113GWAS1582187_Hlymphocyte count QTL GWAS1582187 (human)2e-13lymphocyte countblood lymphocyte count (CMO:0000031)155847832458478325Human
597384900GWAS1480974_Hlymphocyte count QTL GWAS1480974 (human)1e-18lymphocyte countblood lymphocyte count (CMO:0000031)155847832458478325Human

1 to 10 of 10 rows


1 to 9 of 9 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1582187_H GCST90018962 Lymphocyte count 349,856 European ancestry individuals, 95,717 East Asian ancestry individuals T NR 2E-13 12.699 rs7161799 0.0268 lymphocyte count (EFO:0004587)
 PMID:34594039
GWAS1114803_H GCST90002298 Eosinophil counts 474,237 European ancestry individuals T 0.075529 9E-11 10.046 rs7161799 0.024607 eosinophil count (EFO:0004842)
 PMID:32888493
GWAS1637716_H GCST90479664 lymphocyte (absolute count, mean, inv-norm transformed) 70,580 African American or Afro-Caribbean individuals, 36,536 Hispanic or Latin American individuals, 3,839 East Asian ancestry individuals, 253,317 European ancestry individuals C 0.9155 2E-12 11.699 rs7161799 0.04123 lymphocyte count (EFO:0004587)
 PMID:39024449
GWAS1654032_H GCST90475426 lymphocyte (absolute count, mean, inv-norm transformed) 253,317 European ancestry individuals C 0.9186 4E-13 12.398 rs7161799 0.04548 lymphocyte count (EFO:0004587)
 PMID:39024449
GWAS1737646_H GCST90002374 White blood cell count 562,243 European ancestry individuals T 0.076347 3E-12 11.523 rs7161799 0.024589 myeloid leukocyte count (OBA:2045223)
 PMID:32888493
GWAS1462728_H GCST90002316 Lymphocyte count 524,923 European ancestry individuals T 0.076225 3E-21 20.523 rs7161799 0.034112 lymphocyte count (EFO:0004587)
 PMID:32888493
GWAS1469364_H GCST90002320 Lymphocyte count 643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.0884954 2E-19 18.699 rs7161799 N/A lymphocyte count (EFO:0004587)
 PMID:32888493
GWAS1480974_H GCST90002388 Lymphocyte count 408,112 British individuals T 0.074944 1E-18 18 rs7161799 0.037267335 lymphocyte count (EFO:0004587)
 PMID:32888494
GWAS1486909_H GCST90002381 Eosinophil counts 408,112 British individuals T 0.074924 4E-9 8.398 rs7161799 0.024871912 eosinophil count (EFO:0004842)
 PMID:32888494
1 to 9 of 9 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90018962 GWAS Catalog

Note Type Note Reference