GWAS1581263_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1581263_H (phosphatidylethanolamine measurement QTL GWAS1581263 (human)) Homo sapiens

Symbol: GWAS1581263_H
Name: phosphatidylethanolamine measurement QTL GWAS1581263 (human)
RGD ID: 597485189
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,395,171 - 58,395,172RGD_MAPPER_PIPELINEGRCh38
GRCh371558,687,370 - 58,687,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1581263_HHumanphosphatidylethanolamine measurement  IAGPrs17240832405850206 GWAS_CATALOGPMID:35668104

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs17240832)
Human AssemblyChrPosition (strand)Source
GRCh381558,395,171 - 58,395,172RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597486265GWAS1582339_Hphosphatidylethanolamine measurement QTL GWAS1582339 (human)4e-10phosphatidylethanolamine measurement155839517158395172Human
597485770GWAS1581844_Hphosphatidylethanolamine measurement QTL GWAS1581844 (human)1e-10phosphatidylethanolamine measurement155839517158395172Human
597485189GWAS1581263_Hphosphatidylethanolamine measurement QTL GWAS1581263 (human)3e-10phosphatidylethanolamine measurement155839517158395172Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1581263_H GCST90024369 Phosphatidylethanolamine (18:0_20:4) levels 4,492 European ancestry individuals G NR 3E-10 9.523 rs17240832 0.18 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581844_H GCST90024380 Phosphatidylethanolamine (38:5) (b) levels 4,492 European ancestry individuals G NR 1E-10 10 rs17240832 0.185 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1582339_H GCST90024366 Phosphatidylethanolamine (18:0_18:2) levels 4,492 European ancestry individuals G NR 4E-10 9.398 rs17240832 0.18 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
Database
Acc Id
Source(s)
GWAS Catalog GCST90024369 GWAS Catalog

Note Type Note Reference