GWAS1579742_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1579742_H (diglyceride measurement QTL GWAS1579742 (human)) Homo sapiens

Symbol: GWAS1579742_H
Name: diglyceride measurement QTL GWAS1579742 (human)
RGD ID: 597483668
Trait: diglyceride measurement
LOD Score: Not Available
P Value: 5.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,395,404 - 58,395,405RGD_MAPPER_PIPELINEGRCh38
GRCh371558,687,603 - 58,687,604RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1579742_HHumandiglyceride measurement  IAGPrs174418405850206 GWAS_CATALOGPMID:35668104

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs174418)
Human AssemblyChrPosition (strand)Source
GRCh381558,395,404 - 58,395,405RGD_MAPPER_PIPELINE


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597526013GWAS1622087_H2-stearoyl-GPE (18:0) measurement QTL GWAS1622087 (human)4e-132-stearoyl-GPE (18:0) measurement155839540458395405Human
597486268GWAS1582342_Hphosphatidylethanolamine measurement QTL GWAS1582342 (human)2e-47phosphatidylethanolamine measurement155839540458395405Human
597516092GWAS1612166_Hhigh density lipoprotein cholesterol measurement QTL GWAS1612166 (human)4e-30high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155839540458395405Human
597514879GWAS1610953_H1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) measurement QTL GWAS1610953 (human)1e-11glycerophosphocholine amount (VT:0011004)155839540458395405Human
597491583GWAS1587657_Hcomplex trait QTL GWAS1587657 (human)3e-33complex trait155839540458395405Human
597529913GWAS1625987_Hcomplex trait QTL GWAS1625987 (human)1e-38complex trait155839540458395405Human
597483668GWAS1579742_Hdiglyceride measurement QTL GWAS1579742 (human)5e-10diglyceride measurement155839540458395405Human
597516340GWAS1612414_Hcholesterol in small HDL measurement QTL GWAS1612414 (human)4e-32cholesterol in small HDL measurement 155839540458395405Human
597483670GWAS1579744_Hdiglyceride measurement QTL GWAS1579744 (human)8e-09diglyceride measurement155839540458395405Human
597518582GWAS1614656_Hdocosahexaenoic acid to total fatty acids percentage QTL GWAS1614656 (human)5e-37fatty acid amount (VT:0010046)155839540458395405Human

1 to 10 of 22 rows


1 to 20 of 21 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1579742_H GCST90024573 Alkyldiacylglycerol (O-50:1) [NL-16:0] levels 4,492 European ancestry individuals C NR 5E-10 9.302 rs174418 0.14 diglyceride measurement (EFO:0010223)
 PMID:35668104
GWAS1536410_H GCST90133752 1-stearoyl-GPE (18:0) levels in elite athletes 490 individuals ? NR 0.000005 5.302 rs174418 0.27807313 lipid measurement (EFO:0004529)
 PMID:31882771
GWAS1536761_H GCST90133733 1-palmitoyl-GPE (16:0) levels in elite athletes 490 individuals ? NR 6E-7 6.222 rs174418 0.30866852 lipid measurement (EFO:0004529)
 PMID:31882771
GWAS1539031_H GCST90133716 1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) levels in elite athletes 490 individuals ? NR 2E-8 7.699 rs174418 0.3393429 lipid measurement (EFO:0004529)
 PMID:31882771
GWAS1539377_H GCST90133722 1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) levels in elite athletes 490 individuals ? NR 8E-7 6.097 rs174418 0.30229095 lipid measurement (EFO:0004529)
 PMID:31882771
GWAS1541205_H GCST90133725 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) levels in elite athletes 490 individuals ? NR 0.000003 5.523 rs174418 0.29001138 lipid measurement (EFO:0004529)
 PMID:31882771
GWAS1575841_H GCST90025606 Phosphatidylethanolamine (18:0_20:3) (a) levels 4,492 European ancestry individuals C NR 7E-38 37.155 rs174418 0.288 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1579734_H GCST90024606 Total Alkyldiacylglycerol levels 4,492 European ancestry individuals C NR 3E-10 9.523 rs174418 0.142 diglyceride measurement (EFO:0010223)
 PMID:35668104
GWAS1579744_H GCST90024575 Alkyldiacylglycerol (O-52:2) [NL-16:0] levels 4,492 European ancestry individuals C NR 8E-9 8.097 rs174418 0.129 diglyceride measurement (EFO:0010223)
 PMID:35668104
GWAS1580925_H GCST90024086 Diacylglycerol (18:0_18:1) levels 4,492 European ancestry individuals C NR 3E-8 7.523 rs174418 0.125 diglyceride measurement (EFO:0010223)
 PMID:35668104
GWAS1582342_H GCST90024367 Phosphatidylethanolamine (18:0_20:3) (a) levels 4,492 European ancestry individuals C NR 2E-47 46.699 rs174418 0.323 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1583041_H GCST90024564 Triacylglycerol (54:2) [NL-18:0] levels 4,492 European ancestry individuals C NR 1E-12 12 rs174418 0.159 triacylglycerol 54:2 measurement (EFO:0010420)
 PMID:35668104
None Available GCST90024486 Phosphatidylserine (40:6) levels 4,492 European ancestry individuals C NR 2E-8 7.699 rs174418 0.125 phosphatidylserines measurement (EFO:0020049)
 PMID:35668104
GWAS1587657_H GCST90270117 Multi-trait sum score 161,906 European ancestry females ? NR 3E-33 32.523 rs174418 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1590993_H GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 1E-23 23 rs174418 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS1610953_H GCST90200083 1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) levels 8,266 European ancestry individuals C 0.594647 1E-11 11 rs174418 0.108969 1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) measurement (EFO:0800466)
 PMID:36635386
GWAS1612166_H GCST90269669 Concentration of small HDL particles (UKB data field 23572) 88,329 European ancestry individuals T 0.40326 4E-30 29.398 rs174418 0.0551554 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36764567
GWAS1612414_H GCST90269672 Cholesterol in small HDL (UKB data field 23575) 88,329 European ancestry individuals T 0.40326 4E-32 31.398 rs174418 0.0569139 cholesterol in small HDL measurement (EFO:0022226)
 PMID:36764567
GWAS1614656_H GCST90269554 Docosahexaenoic acid to total fatty acids percentage (UKB data field 23457) 88,268 European ancestry individuals T 0.40325 5E-37 36.302 rs174418 0.0593257 docosahexaenoic acid to total fatty acids percentage (EFO:0022262)
 PMID:36764567
GWAS1622087_H GCST90199928 2-stearoyl-GPE (18:0) levels 8,073 European ancestry individuals C 0.59371 4E-13 12.398 rs174418 0.118161 2-stearoyl-GPE (18:0) measurement (EFO:0800343)
 PMID:36635386
1 to 20 of 21 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90024573 GWAS Catalog

Note Type Note Reference