GWAS1576472_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1576472_H (Hypermetropia, Myopia QTL GWAS1576472 (human)) Homo sapiens

Symbol: GWAS1576472_H
Name: Hypermetropia, Myopia QTL GWAS1576472 (human)
RGD ID: 597480398
Trait: Hypermetropia, Myopia
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,097,415 - 6,097,416RGD_MAPPER_PIPELINEGRCh38
GRCh3716,157,475 - 6,157,476RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1576472_HHumanHypermetropia  IAGPrs182856833405850206 GWAS_CATALOGPMID:33830181
GWAS1576472_HHumanMyopia  IAGPrs182856833405850206 GWAS_CATALOGPMID:33830181

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1354203KCNAB2potassium voltage-gated channel subfamily A regulatory beta subunit 2159926766101180Human


Peak: (rs182856833)
Human AssemblyChrPosition (strand)Source
GRCh3816,097,415 - 6,097,416RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597480398GWAS1576472_HHypermetropia, Myopia QTL GWAS1576472 (human)0.000003Hypermetropia, Myopia160974156097416Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1576472_H GCST012400 Low myopia vs hyperopia 11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases ? NR 0.000003 5.523 rs182856833 0.454903 Hypermetropia (HP:0000540)
Myopia (HP:0000545)
 PMID:33830181
Database
Acc Id
Source(s)
GWAS Catalog GCST012400 GWAS Catalog

Note Type Note Reference