GWAS1575673_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1575673_H (total cortical area measurement QTL GWAS1575673 (human)) Homo sapiens

Symbol: GWAS1575673_H
Name: total cortical area measurement QTL GWAS1575673 (human)
RGD ID: 597479599
Trait: cerebral cortex morphology trait   (VT:0000788)    
LOD Score: Not Available
P Value: 8.0E-77
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,341,676 - 39,341,678RGD_MAPPER_PIPELINEGRCh38
GRCh371539,633,877 - 39,633,879RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1575673_HHumancerebral cortex morphology trait  IAGPrs5812099405850206Based on the EFO term IDGWAS_CATALOGPMID:33875891

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1575673_HHumantotal cortical area measurement  IAGPrs5812099405850206 GWAS_CATALOGPMID:33875891

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human


Peak: (rs5812099)
Human AssemblyChrPosition (strand)Source
GRCh381539,341,676 - 39,341,678RGD_MAPPER_PIPELINE


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
597517149GWAS1613223_Hneuroimaging measurement QTL GWAS1613223 (human)3e-09neuroimaging measurement153934167639341678Human
597479645GWAS1575719_Htotal cortical area measurement QTL GWAS1575719 (human)3e-116cerebral cortex morphology trait (VT:0000788)153934167639341678Human
597517439GWAS1613513_Hneuroimaging measurement QTL GWAS1613513 (human)3e-08neuroimaging measurement153934167639341678Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
597522491GWAS1618565_Hneuroimaging measurement QTL GWAS1618565 (human)6e-13neuroimaging measurement153934167639341678Human
597517493GWAS1613567_Hneuroimaging measurement QTL GWAS1613567 (human)5e-12neuroimaging measurement153934167639341678Human
597483184GWAS1579258_Htotal cortical area measurement QTL GWAS1579258 (human)3e-31cerebral cortex morphology trait (VT:0000788)153934167639341678Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 24 rows


1 to 19 of 19 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1575673_H GCST90003212 BA-exvivo lh area BA4p 21,281 British ancestry individuals AG 0.089 8E-77 76.097 rs5812099 0.315 total cortical area measurement (EFO:0008381)
 PMID:33875891
GWAS1741494_H GCST90002857 BA-exvivo rh volume BA45 21,281 British ancestry individuals AG 0.089 7E-18 17.155 rs5812099 0.147 brain volume (OBA:2050009)
 PMID:33875891
GWAS1575671_H GCST90003209 BA-exvivo lh area BA3a 21,281 British ancestry individuals AG 0.089 5E-79 78.302 rs5812099 0.319 total cortical area measurement (EFO:0008381)
 PMID:33875891
GWAS1575672_H GCST90003210 BA-exvivo lh area BA3b 21,281 British ancestry individuals AG 0.089 4E-87 86.398 rs5812099 0.335 total cortical area measurement (EFO:0008381)
 PMID:33875891
GWAS1575719_H GCST90003341 aparc-a2009s lh area S-central 21,282 British ancestry individuals AG 0.089 3E-116 115.523 rs5812099 0.388 total cortical area measurement (EFO:0008381)
 PMID:33875891
GWAS1579258_H GCST90003094 aparc-Desikan lh area postcentral 21,282 British ancestry individuals AG 0.089 3E-31 30.523 rs5812099 0.198 total cortical area measurement (EFO:0008381)
 PMID:33875891
GWAS1613223_H GCST90385065 T1 FreeSurfer a2009s rh G postcentral volume 7,058 Chinese Han ancestry individuals AG NR 3E-9 8.523 rs5812099 0.202051 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1613237_H GCST90385082 T1 FreeSurfer a2009s rh S central volume 7,058 Chinese Han ancestry individuals AG NR 7E-20 19.155 rs5812099 0.289891 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1613513_H GCST90385507 T1 FreeSurfer BA lh BA3a exvivo area 7,058 Chinese Han ancestry individuals AG NR 3E-8 7.523 rs5812099 0.175588 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1613514_H GCST90385508 T1 FreeSurfer BA lh BA3b exvivo area 7,058 Chinese Han ancestry individuals AG NR 3E-7 6.523 rs5812099 0.151619 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1613515_H GCST90385510 T1 FreeSurfer BA lh BA4p exvivo area 7,058 Chinese Han ancestry individuals AG NR 5E-9 8.302 rs5812099 0.18581 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1613560_H GCST90384860 T1 FreeSurfer a2009s lh S central volume 7,058 Chinese Han ancestry individuals AG NR 4E-15 14.398 rs5812099 0.256871 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1613567_H GCST90384712 T1 FreeSurfer a2009s lh S central area 7,058 Chinese Han ancestry individuals AG NR 5E-12 11.302 rs5812099 0.218073 neuroimaging measurement (EFO:0004346)
 PMID:38811844
None Available GCST90384934 T1 FreeSurfer a2009s rh S central area 7,058 Chinese Han ancestry individuals AG NR 5E-12 11.302 rs5812099 0.220666 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1618565_H GCST90385577 T1 FreeSurfer BA rh BA3a exvivo volume 7,058 Chinese Han ancestry individuals AG NR 6E-13 12.222 rs5812099 0.222948 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1618573_H GCST90385535 T1 FreeSurfer BA lh BA3a exvivo volume 7,058 Chinese Han ancestry individuals AG NR 1E-9 9 rs5812099 0.194104 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1618575_H GCST90385538 T1 FreeSurfer BA lh BA4p exvivo volume 7,058 Chinese Han ancestry individuals AG NR 6E-9 8.222 rs5812099 0.191731 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1618576_H GCST90385549 T1 FreeSurfer BA rh BA3a exvivo area 7,058 Chinese Han ancestry individuals AG NR 3E-10 9.523 rs5812099 0.195227 neuroimaging measurement (EFO:0004346)
 PMID:38811844
None Available GCST90385562 T1 FreeSurfer BA rh BA2 exvivo thickness 7,058 Chinese Han ancestry individuals AG NR 3E-8 7.523 rs5812099 0.202896 neuroimaging measurement (EFO:0004346)
 PMID:38811844
1 to 19 of 19 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90003212 GWAS Catalog

Note Type Note Reference