GWAS1575627_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1575627_H (total cortical area measurement QTL GWAS1575627 (human)) Homo sapiens

Symbol: GWAS1575627_H
Name: total cortical area measurement QTL GWAS1575627 (human)
RGD ID: 597479553
Trait: cerebral cortex morphology trait   (VT:0000788)    
LOD Score: Not Available
P Value: 1.0E-61
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,342,021 - 39,342,022RGD_MAPPER_PIPELINEGRCh38
GRCh371539,634,222 - 39,634,223RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1575627_HHumancerebral cortex morphology trait  IAGPrs1080066405850206Based on the EFO term IDGWAS_CATALOGPMID:33875891

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1575627_HHumantotal cortical area measurement  IAGPrs1080066405850206 GWAS_CATALOGPMID:33875891

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human


Peak: (rs1080066)
Human AssemblyChrPosition (strand)Source
GRCh381539,342,021 - 39,342,022RGD_MAPPER_PIPELINE


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597518172GWAS1614246_Hneuroimaging measurement QTL GWAS1614246 (human)0.0000004neuroimaging measurement153934202139342022Human
597385055GWAS1481129_Hcortical thickness, neuroimaging measurement QTL GWAS1481129 (human)7e-120cortical thickness, neuroimaging measurement153934202139342022Human
597518167GWAS1614241_Hneuroimaging measurement QTL GWAS1614241 (human)5e-08neuroimaging measurement153934202139342022Human
597479574GWAS1575648_Htotal cortical area measurement QTL GWAS1575648 (human)4e-85cerebral cortex morphology trait (VT:0000788)153934202139342022Human
597484118GWAS1580192_Htotal cortical area measurement QTL GWAS1580192 (human)1e-55cerebral cortex morphology trait (VT:0000788)153934202139342022Human
597518163GWAS1614237_Hneuroimaging measurement QTL GWAS1614237 (human)1e-08neuroimaging measurement153934202139342022Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597484172GWAS1580246_Htotal cortical area measurement QTL GWAS1580246 (human)8e-53cerebral cortex morphology trait (VT:0000788)153934202139342022Human
597484173GWAS1580247_Htotal cortical area measurement QTL GWAS1580247 (human)7e-89cerebral cortex morphology trait (VT:0000788)153934202139342022Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human

1 to 10 of 36 rows


1 to 20 of 55 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1575627_H GCST90003399 aparc-a2009s rh area G-precentral 21,282 British ancestry individuals G 0.089 1E-61 61 rs1080066 0.281 total cortical area measurement (EFO:0008381)
 PMID:33875891
GWAS1704630_H GCST010703 Brain morphology (MOSTest) 26,502 European ancestry individuals ? NR 1E-305 305 rs1080066 N/A brain attribute (OBA:2045210)
neuroimaging measurement (EFO:0004346)
 PMID:32665545
GWAS1705320_H GCST010701 Cortical surface area (MOSTest) 26,502 European ancestry individuals ? NR 1E-242 242 rs1080066 N/A cerebral cortex area attribute (OBA:2045267)
neuroimaging measurement (EFO:0004346)
 PMID:32665545
GWAS1706727_H GCST011617 Cortical surface area 18,617 European and African American ancestry individuals ? NR 2E-80 79.699 rs1080066 N/A cerebral cortex area attribute (OBA:2045267)
 PMID:32963231
GWAS1707108_H GCST011617 Cortical surface area 18,617 European and African American ancestry individuals ? NR 1E-200 200 rs1080066 N/A cerebral cortex area attribute (OBA:2045267)
 PMID:32963231
GWAS1707109_H GCST011616 Cortical volume 22,824 European and African American ancestry individuals ? NR 6E-125 124.222 rs1080066 N/A brain volume (OBA:2050009)
 PMID:32963231
GWAS1733580_H GCST010282 Cortical surface area 33,992 European ancestry individuals A 0.9098 3E-184 183.523 rs1080066 124.7257 cerebral cortex area attribute (OBA:2045267)
 PMID:32193296
GWAS1733581_H GCST010282 Cortical surface area 33,992 European ancestry individuals A 0.9103 3E-12 11.523 rs1080066 42.6451 cerebral cortex area attribute (OBA:2045267)
 PMID:32193296
GWAS1741086_H GCST90002952 aparc-a2009s lh volume G-postcentral 21,282 British ancestry individuals G 0.089 2E-91 90.699 rs1080066 0.343 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741215_H GCST90003027 aparc-a2009s rh volume G-precentral 21,282 British ancestry individuals G 0.089 8E-62 61.097 rs1080066 0.281 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741220_H GCST90003043 aparc-a2009s rh volume S-central 21,282 British ancestry individuals G 0.089 3E-119 118.523 rs1080066 0.392 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741300_H GCST90002840 BA-exvivo lh volume BA4p 21,281 British ancestry individuals G 0.089 2E-39 38.699 rs1080066 0.223 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741302_H GCST90002853 BA-exvivo rh volume BA4a 21,281 British ancestry individuals G 0.089 1E-12 12 rs1080066 0.121 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741303_H GCST90002854 BA-exvivo rh volume BA4p 21,281 British ancestry individuals G 0.089 4E-53 52.398 rs1080066 0.26 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741307_H GCST90002849 BA-exvivo rh volume BA1 21,281 British ancestry individuals G 0.089 1E-62 62 rs1080066 0.283 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741339_H GCST90003026 aparc-a2009s rh volume G-postcentral 21,282 British ancestry individuals G 0.089 2E-90 89.699 rs1080066 0.341 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741429_H GCST90002822 aparc-Desikan rh volume postcentral 21,282 British ancestry individuals G 0.089 1E-84 84 rs1080066 0.33 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741431_H GCST90002824 aparc-Desikan rh volume precentral 21,282 British ancestry individuals G 0.089 2E-74 73.699 rs1080066 0.309 brain volume (OBA:2050009)
 PMID:33875891
None Available GCST90002835 BA-exvivo lh volume BA1 21,281 British ancestry individuals G 0.089 2E-91 90.699 rs1080066 0.343 brain volume (OBA:2050009)
 PMID:33875891
GWAS1741439_H GCST90002852 BA-exvivo rh volume BA3b 21,281 British ancestry individuals G 0.089 8E-165 164.097 rs1080066 0.461 brain volume (OBA:2050009)
 PMID:33875891
1 to 20 of 55 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90003399 GWAS Catalog

Note Type Note Reference