GWAS1569311_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1569311_H (heel bone mineral density QTL GWAS1569311 (human)) Homo sapiens

Symbol: GWAS1569311_H
Name: heel bone mineral density QTL GWAS1569311 (human)
RGD ID: 597473237
Trait: heel bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 2.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,067,454 - 11,067,455RGD_MAPPER_PIPELINEGRCh38
GRCh37111,127,511 - 11,127,512RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1569311_HHumanbone mineral density  IAGPrs12569242405850206 GWAS_CATALOGPMID:30048462

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1569311_HHumanheel bone mineral density  IAGPrs12569242405850206 GWAS_CATALOGPMID:30048462

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1349336EXOSC10exosome component 1011106661811099869Human


Peak: (rs12569242)
Human AssemblyChrPosition (strand)Source
GRCh38111,067,454 - 11,067,455RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597473237GWAS1569311_Hheel bone mineral density QTL GWAS1569311 (human)2e-21heel bone mineral densitybone mineral density (CMO:0001226)11106745411067455Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1569311_H GCST006433 Heel bone mineral density 394,929 European ancestry individuals ? NR 2E-21 20.699 rs12569242 0.0215932 heel bone mineral density (EFO:0009270)
 PMID:30048462
Database
Acc Id
Source(s)
GWAS Catalog GCST006433 GWAS Catalog

Note Type Note Reference