GWAS1563393_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1563393_H (waist-hip ratio QTL GWAS1563393 (human)) Homo sapiens

Symbol: GWAS1563393_H
Name: waist-hip ratio QTL GWAS1563393 (human)
RGD ID: 597467319
Trait: waist-hip ratio
Measurement Type: waist to hip ratio (WHR)   (CMO:0000020)    
LOD Score: Not Available
P Value: 2.0E-30
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,900,932 - 46,900,933RGD_MAPPER_PIPELINEGRCh38
GRCh372045,529,571 - 45,529,572RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1563393_HHumanwaist to hip ratio (WHR)  IAGPrs2236519405850206 GWAS_CATALOGPMID:30239722

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1563393_HHumanwaist-hip ratio  IAGPrs2236519405850206 GWAS_CATALOGPMID:30239722

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human
38605054EYA2-AS1EYA2 antisense RNA 1204690038846901748Human
155229623LOC126863041BRD4-independent group 4 enhancer GRCh37_chr20:45529211-45530410204690057246901771Human


Peak: (rs2236519)
Human AssemblyChrPosition (strand)Source
GRCh382046,900,932 - 46,900,933RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597458472GWAS1554546_HBMI-adjusted waist-hip ratio QTL GWAS1554546 (human)2e-33body size trait (VT:0100005)204690093246900933Human
597363661GWAS1459735_HBMI-adjusted waist-hip ratio QTL GWAS1459735 (human)3e-55body size trait (VT:0100005)204690093246900933Human
597468277GWAS1564351_HBMI-adjusted waist-hip ratio QTL GWAS1564351 (human)4e-58body size trait (VT:0100005)204690093246900933Human
597467319GWAS1563393_Hwaist-hip ratio QTL GWAS1563393 (human)2e-30waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)204690093246900933Human
597367767GWAS1463841_Hwaist-hip ratio QTL GWAS1463841 (human)5e-08waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)204690093246900933Human
597455217GWAS1551291_HBMI-adjusted waist-hip ratio QTL GWAS1551291 (human)7e-33body size trait (VT:0100005)204690093246900933Human
597432818GWAS1528892_Hvital capacity QTL GWAS1528892 (human)4e-08vital capacity204690093246900933Human
597399636GWAS1495710_HBMI-adjusted hip circumference QTL GWAS1495710 (human)8e-17BMI-adjusted hip circumferencehip circumference (CMO:0000014)204690093246900933Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1563393_H GCST008996 Waist-hip ratio 697,734 European ancestry individuals A 0.3693 2E-30 29.699 rs2236519 0.0212 waist-hip ratio (EFO:0004343)
 PMID:30239722
GWAS1459735_H GCST008733 Waist-to-hip ratio adjusted for BMI 660,648 European ancestry individuals A 0.37 3E-55 54.523 rs2236519 0.03 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:30575882
GWAS1463841_H GCST008734 Waist-hip ratio 663,598 European ancestry individuals A 0.37 5E-8 7.302 rs2236519 N/A waist-hip ratio (EFO:0004343)
 PMID:30575882
GWAS1495710_H GCST90020028 Hip circumference adjusted for BMI 219,872 British ancestry women A NR 8E-17 16.097 rs2236519 0.0243419 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
GWAS1528892_H GCST006483 Lung function (FVC) 60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals A 0.38 4E-8 7.398 rs2236519 18.06 vital capacity (EFO:0004312)
 PMID:30061609
GWAS1551291_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women A NR 7E-33 32.155 rs2236519 0.0349312 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1554546_H GCST90020027 Waist-hip index 219,872 British ancestry women A NR 2E-33 32.699 rs2236519 0.0352004 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1564351_H GCST008994 Waist-to-hip ratio adjusted for BMI 379,501 European ancestry female individuals A 0.3693 4E-58 57.398 rs2236519 0.0298 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:30239722
Database
Acc Id
Source(s)
GWAS Catalog GCST008996 GWAS Catalog

Note Type Note Reference