GWAS1553360_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1553360_H (high density lipoprotein cholesterol measurement QTL GWAS1553360 (human)) Homo sapiens

Symbol: GWAS1553360_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1553360 (human)
RGD ID: 597457286
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381730,454,774 - 30,454,775RGD_MAPPER_PIPELINEGRCh38
GRCh371728,781,792 - 28,781,793RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1553360_HHumanblood high density lipoprotein cholesterol level  IAGPrs2011614405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1553360_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs2011614405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731463CPDcarboxypeptidase D173037892730469989Human


Peak: (rs2011614)
Human AssemblyChrPosition (strand)Source
GRCh381730,454,774 - 30,454,775RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human
597392542GWAS1488616_Hhigh density lipoprotein cholesterol measurement QTL GWAS1488616 (human)4e-13high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)173045477430454775Human
597505028GWAS1601102_Hhigh density lipoprotein cholesterol measurement QTL GWAS1601102 (human)3e-08high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)173045477430454775Human
597457286GWAS1553360_Hhigh density lipoprotein cholesterol measurement QTL GWAS1553360 (human)9e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)173045477430454775Human
597492371GWAS1588445_Hsexual dimorphism measurement QTL GWAS1588445 (human)9e-09sexual dimorphism measurement173045477430454775Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1553360_H GCST90018956 HDL cholesterol 315,133 European ancestry individuals, 74,970 East Asian ancestry individuals A NR 9E-10 9.046 rs2011614 0.0143 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34594039
GWAS1488616_H GCST010242 HDL cholesterol levels 403,943 European ancestry individuals G 0.648958 4E-13 12.398 rs2011614 0.0144905 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:32203549
GWAS1588445_H GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 9E-9 8.046 rs2011614 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS1601102_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 3E-8 7.523 rs2011614 0.01514 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90018956 GWAS Catalog

Note Type Note Reference