GWAS1552000_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1552000_H (lymphocyte measurement, neutrophil measurement QTL GWAS1552000 (human)) Homo sapiens

Symbol: GWAS1552000_H
Name: lymphocyte measurement, neutrophil measurement QTL GWAS1552000 (human)
RGD ID: 597455926
Trait: lymphocyte measurement, neutrophil measurement
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38799,659,221 - 99,659,222RGD_MAPPER_PIPELINEGRCh38
GRCh37799,256,844 - 99,256,845RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1552000_HHumanlymphocyte measurement  IAGPrs7780328405850206 GWAS_CATALOGPMID:38965376
GWAS1552000_HHumanneutrophil measurement  IAGPrs7780328405850206 GWAS_CATALOGPMID:38965376

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318498ZSCAN25zinc finger and SCAN domain containing 2579961694699738035Human
1348646CYP3A5cytochrome P450 family 3 subfamily A member 579964819499679996Human


Peak: (rs7780328)
Human AssemblyChrPosition (strand)Source
GRCh38799,659,221 - 99,659,222RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597458980GWAS1555054_Hneutrophil-to-lymphocyte ratio QTL GWAS1555054 (human)6e-11neutrophil-to-lymphocyte ratio79965922199659222Human
597455926GWAS1552000_Hlymphocyte measurement, neutrophil measurement QTL GWAS1552000 (human)1e-09lymphocyte measurement, neutrophil measurement79965922199659222Human
596955882GWAS1075401_Hlymphocyte measurement, neutrophil measurement QTL GWAS1075401 (human)1e-09lymphocyte measurement, neutrophil measurement79965922199659222Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1552000_H GCST90309369 Neutrophils and lymphocytes in blood (confirmatory factor analysis Factor 35) 349,613 European ancestry individuals ? NR 1E-9 9 rs7780328 N/A lymphocyte measurement (EFO:0803546)
neutrophil measurement (EFO:0803548)
 PMID:38965376
GWAS1555054_H GCST90056182 Neutrophil-to-lymphocyte ratio 234,502 European ancestry individuals A 0.933 6E-11 10.222 rs7780328 N/A neutrophil-to-lymphocyte ratio (EFO:0008447)
 PMID:34469753
Database
Acc Id
Source(s)
GWAS Catalog GCST90309369 GWAS Catalog

Note Type Note Reference