GWAS1551680_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1551680_H (body mass index QTL GWAS1551680 (human)) Homo sapiens

Symbol: GWAS1551680_H
Name: body mass index QTL GWAS1551680 (human)
RGD ID: 597455606
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 5.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381536,099,764 - 36,099,765RGD_MAPPER_PIPELINEGRCh38
GRCh371536,391,965 - 36,391,966RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1551680_HHumanbody mass index (BMI)  IAGPrs11636611405850206 GWAS_CATALOGPMID:39375568

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1551680_HHumanbody mass index  IAGPrs11636611405850206 GWAS_CATALOGPMID:39375568

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11636611)
Human AssemblyChrPosition (strand)Source
GRCh381536,099,764 - 36,099,765RGD_MAPPER_PIPELINE


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
596985878GWAS1105397_Hbody mass index QTL GWAS1105397 (human)5e-09body mass index153609976436099765Human
596961751GWAS1081270_Hmetabolic syndrome QTL GWAS1081270 (human)7e-16metabolic syndrome153609976436099765Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
597461912GWAS1557986_Hbody mass index QTL GWAS1557986 (human)9e-10body mass indexbody mass index (BMI) (CMO:0000105)153609976436099765Human
597455606GWAS1551680_Hbody mass index QTL GWAS1551680 (human)5e-09body mass indexbody mass index (BMI) (CMO:0000105)153609976436099765Human
597018425GWAS1114499_Hmetabolic syndrome QTL GWAS1114499 (human)7e-16metabolic syndrome153609976436099765Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human

1 to 10 of 14 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1551680_H GCST90446645 Body mass index 650,000 European ancestry individuals C 0.5011 5E-9 8.302 rs11636611 0.0106 body mass index (EFO:0004340)
 PMID:39375568
GWAS1114499_H GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 7E-16 15.155 rs11636611 0.00981975 metabolic syndrome (EFO:0000195)
 PMID:39349817
GWAS1557986_H GCST009004 Body mass index 806,834 European ancestry individuals T 0.4981 9E-10 9.046 rs11636611 0.0104 body mass index (EFO:0004340)
 PMID:30239722
GWAS1596812_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals T NR 1E-9 9 rs11636611 0.010348 body mass index (EFO:0004340)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90446645 GWAS Catalog

Note Type Note Reference