GWAS1550436_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1550436_H (BMI-adjusted waist circumference QTL GWAS1550436 (human)) Homo sapiens

Symbol: GWAS1550436_H
Name: BMI-adjusted waist circumference QTL GWAS1550436 (human)
RGD ID: 597454362
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381556,426,626 - 56,426,627RGD_MAPPER_PIPELINEGRCh38
GRCh371556,718,824 - 56,718,825RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1550436_HHumanbody size trait  IAGPrs5005389405850206 GWAS_CATALOGPMID:34021172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1550436_HHumanBMI-adjusted waist circumference  IAGPrs5005389405850206 GWAS_CATALOGPMID:34021172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606392TEX9testis expressed 9155624397356460010Human


Peak: (rs5005389)
Human AssemblyChrPosition (strand)Source
GRCh381556,426,626 - 56,426,627RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597456522GWAS1552596_HBMI-adjusted waist-hip ratio QTL GWAS1552596 (human)3e-09body size trait (VT:0100005)155642662656426627Human
597454362GWAS1550436_HBMI-adjusted waist circumference QTL GWAS1550436 (human)2e-09body size trait (VT:0100005)155642662656426627Human
597508891GWAS1604965_HBMI-adjusted waist circumference QTL GWAS1604965 (human)5e-12body size trait (VT:0100005)155642662656426627Human
597429072GWAS1525146_Herythrocyte count QTL GWAS1525146 (human)3e-10erythrocyte countred blood cell count (CMO:0000025)155642662656426627Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597407718GWAS1503792_HBMI-adjusted waist-hip ratio QTL GWAS1503792 (human)9e-10body size trait (VT:0100005)155642662656426627Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1550436_H GCST90020024 A body shape index 219,872 British ancestry women C NR 2E-9 8.699 rs5005389 0.0180753 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1503792_H GCST90020027 Waist-hip index 219,872 British ancestry women C NR 9E-10 9.046 rs5005389 0.0182161 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1525146_H GCST90002403 Red blood cell count 408,112 British individuals C 0.362013 3E-10 9.523 rs5005389 0.014651075 erythrocyte count (EFO:0004305)
 PMID:32888494
GWAS1552596_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women C NR 3E-9 8.523 rs5005389 0.0176862 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1604965_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women C NR 5E-12 11.302 rs5005389 0.0207125 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
Database
Acc Id
Source(s)
GWAS Catalog GCST90020024 GWAS Catalog

Note Type Note Reference