GWAS1550152_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1550152_H (BMI-adjusted waist circumference QTL GWAS1550152 (human)) Homo sapiens

Symbol: GWAS1550152_H
Name: BMI-adjusted waist circumference QTL GWAS1550152 (human)
RGD ID: 597454078
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38975,889,813 - 75,889,814RGD_MAPPER_PIPELINEGRCh38
GRCh37978,504,729 - 78,504,730RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1550152_HHumanbody size trait  IAGPrs3814115405850206 GWAS_CATALOGPMID:34021172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1550152_HHumanBMI-adjusted waist circumference  IAGPrs3814115405850206 GWAS_CATALOGPMID:34021172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732125PCSK5proprotein convertase subtilisin/kexin type 597588980976362975Human


Peak: (rs3814115)
Human AssemblyChrPosition (strand)Source
GRCh38975,889,813 - 75,889,814RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597454078GWAS1550152_HBMI-adjusted waist circumference QTL GWAS1550152 (human)3e-11body size trait (VT:0100005)97588981375889814Human
596975372GWAS1094891_Hbody height QTL GWAS1094891 (human)3e-29body height97588981375889814Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1550152_H GCST012226 Waist circumference adjusted for body mass index 186,825 British ancestry men C NR 3E-11 10.523 rs3814115 0.0220384 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1754023_H GCST90435412 Height 404,900 European ancestry individuals ? NR 3E-29 28.523 rs3814115 0.0209114 body height (OBA:VT0001253)
 PMID:39134668
GWAS1776003_H GCST90245844 Height 455,180 Hispanic or Latin American individuals C 0.374 3E-9 8.523 rs3814115 0.0137 body height (OBA:VT0001253)
 PMID:36224396
GWAS1787695_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals C 0.3408 2E-199 198.699 rs3814115 0.0207 body height (OBA:VT0001253)
 PMID:36224396
Database
Acc Id
Source(s)
GWAS Catalog GCST012226 GWAS Catalog

Note Type Note Reference