GWAS1547228_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1547228_H (high density lipoprotein cholesterol measurement QTL GWAS1547228 (human)) Homo sapiens

Symbol: GWAS1547228_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1547228 (human)
RGD ID: 597451154
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 7E-122
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,424,416 - 58,424,417RGD_MAPPER_PIPELINEGRCh38
GRCh371558,716,615 - 58,716,616RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1547228_HHumanblood high density lipoprotein cholesterol level  IAGPrs375372405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1547228_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs375372405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs375372)
Human AssemblyChrPosition (strand)Source
GRCh381558,424,416 - 58,424,417RGD_MAPPER_PIPELINE


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597525119GWAS1621193_Hsexual dimorphism measurement QTL GWAS1621193 (human)9e-14sexual dimorphism measurement155842441658424417Human
597418558GWAS1514632_Hphosphatidylcholine measurement QTL GWAS1514632 (human)5e-24phosphatidylcholine measurement155842441658424417Human
597420253GWAS1516327_Htriglyceride measurement QTL GWAS1516327 (human)1e-12triglyceride measurementblood triglyceride level (CMO:0000118)155842441658424417Human
597454107GWAS1550181_Htotal cholesterol measurement QTL GWAS1550181 (human)2e-42total cholesterol measurementblood total cholesterol level (CMO:0000051)155842441658424417Human
597427707GWAS1523781_Hphosphatidylcholine measurement QTL GWAS1523781 (human)1e-19phosphatidylcholine measurement155842441658424417Human
597490836GWAS1586910_Hsexual dimorphism measurement QTL GWAS1586910 (human)1e-08sexual dimorphism measurement155842441658424417Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597451154GWAS1547228_Hhigh density lipoprotein cholesterol measurement QTL GWAS1547228 (human)7e-122high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155842441658424417Human
597529906GWAS1625980_Hcomplex trait QTL GWAS1625980 (human)3e-12complex trait155842441658424417Human
597424276GWAS1520350_Hapolipoprotein A 1 measurement QTL GWAS1520350 (human)3e-174apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155842441658424417Human

1 to 10 of 19 rows


1 to 17 of 17 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1547228_H GCST90019510 High density lipoprotein cholesterol levels 313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals G NR 7E-122 121.155 rs375372 0.0597 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33462484
GWAS1513004_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 2E-25 24.699 rs375372 0.130067 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514632_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 5E-24 23.302 rs375372 0.122595 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514959_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 3E-24 23.523 rs375372 0.12003 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1516327_H GCST90019523 Triglyceride levels 342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals G NR 1E-12 12 rs375372 0.0173 triglyceride measurement (EFO:0004530)
 PMID:33462484
GWAS1517484_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals G NR 2E-13 12.699 rs375372 0.0179 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
GWAS1520350_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals G NR 3E-174 173.523 rs375372 0.0717 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
GWAS1521425_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals T NR 4E-21 20.398 rs375372 0.110848 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521810_H GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals T NR 9E-13 12.046 rs375372 0.083895 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1523781_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 1E-19 19 rs375372 0.112664 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524618_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals T NR 1E-25 25 rs375372 0.124321 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1550181_H GCST90019501 Total cholesterol levels 342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals G NR 2E-42 41.699 rs375372 0.0333 total cholesterol measurement (EFO:0004574)
 PMID:33462484
GWAS1586609_H GCST90270117 Multi-trait sum score 161,906 European ancestry females ? NR 7E-10 9.155 rs375372 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1586910_H GCST90270118 Multi-trait sex score 141,980 European ancestry males ? NR 1E-8 8 rs375372 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS1601170_H GCST90102725 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) levels 8,809 European ancestry individuals T NR 1E-23 23 rs375372 0.153 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) measurement (EFO:0800608)
 PMID:35050183
GWAS1621193_H GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 9E-14 13.046 rs375372 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS1625980_H GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 3E-12 11.523 rs375372 N/A complex trait (EFO:0010578)
 PMID:37277458
1 to 17 of 17 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90019510 GWAS Catalog

Note Type Note Reference