GWAS1545780_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1545780_H (triglyceride measurement QTL GWAS1545780 (human)) Homo sapiens

Symbol: GWAS1545780_H
Name: triglyceride measurement QTL GWAS1545780 (human)
RGD ID: 597449706
Trait: triglyceride measurement
Measurement Type: blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,452,282 - 58,452,283RGD_MAPPER_PIPELINEGRCh38
GRCh371558,744,481 - 58,744,482RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1545780_HHumanblood triglyceride level  IAGPrs35138338405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1545780_HHumantriglyceride measurement  IAGPrs35138338405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736877LIPClipase C, hepatic type155843199158569844Human
11084824LIPC-AS1LIPC antisense RNA 1155843490158498735Human


Peak: (rs35138338)
Human AssemblyChrPosition (strand)Source
GRCh381558,452,282 - 58,452,283RGD_MAPPER_PIPELINE


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597488348GWAS1584422_Hlysophosphatidylethanolamine 18:0 measurement QTL GWAS1584422 (human)2e-08blood lipid amount (VT:0003949)155845228258452283Human
597488056GWAS1584130_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS1584130 (human)0.0000001blood lipid amount (VT:0003949)155845228258452283Human
597447353GWAS1543427_Htotal cholesterol measurement QTL GWAS1543427 (human)3e-13total cholesterol measurementblood total cholesterol level (CMO:0000051)155845228258452283Human
597424925GWAS1520999_Hapolipoprotein A 1 measurement QTL GWAS1520999 (human)5e-46apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155845228258452283Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597485459GWAS1581533_Hphosphatidylethanolamine measurement QTL GWAS1581533 (human)4e-08phosphatidylethanolamine measurement155845228258452283Human
597488044GWAS1584118_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS1584118 (human)0.0000006blood lipid amount (VT:0003949)155845228258452283Human
597418890GWAS1514964_Hphosphatidylcholine measurement QTL GWAS1514964 (human)1e-11phosphatidylcholine measurement155845228258452283Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597503272GWAS1599346_Hhigh density lipoprotein cholesterol measurement QTL GWAS1599346 (human)6e-13high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155845228258452283Human

1 to 10 of 19 rows


1 to 18 of 18 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1545780_H GCST90019523 Triglyceride levels 342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals T NR 3E-10 9.523 rs35138338 0.0169 triglyceride measurement (EFO:0004530)
 PMID:33462484
GWAS1514640_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 4E-10 9.398 rs35138338 0.0815678 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1514964_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 1E-11 11 rs35138338 0.0863069 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1520999_H GCST90019495 Apolipoprotein A1 levels 311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals T NR 5E-46 45.302 rs35138338 0.04 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:33462484
GWAS1523786_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals T NR 2E-10 9.699 rs35138338 0.0846218 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1524049_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals T NR 2E-13 12.699 rs35138338 0.0931831 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1524624_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals T NR 1E-12 12 rs35138338 0.0913217 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1543427_H GCST90019501 Total cholesterol levels 342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals T NR 3E-13 12.523 rs35138338 0.0195 total cholesterol measurement (EFO:0004574)
 PMID:33462484
GWAS1549486_H GCST90019510 High density lipoprotein cholesterol levels 313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals T NR 5E-33 32.302 rs35138338 0.0335 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33462484
GWAS1579406_H GCST90024597 Total Phosphatidylethanolamine levels 4,492 European ancestry individuals T NR 7E-8 7.155 rs35138338 0.15 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581533_H GCST90024369 Phosphatidylethanolamine (18:0_20:4) levels 4,492 European ancestry individuals T NR 4E-8 7.398 rs35138338 0.152 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1581839_H GCST90024379 Phosphatidylethanolamine (38:5) (a) levels 4,492 European ancestry individuals T NR 0.000001 6 rs35138338 0.136 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1584118_H GCST90024204 Lysophosphatidylethanolamine (16:0) [sn1] levels 4,492 European ancestry individuals T NR 6E-7 6.222 rs35138338 0.139 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
GWAS1584130_H GCST90024205 Lysophosphatidylethanolamine (16:0) [sn2] levels 4,492 European ancestry individuals T NR 1E-7 7 rs35138338 0.147 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
GWAS1584422_H GCST90024208 Lysophosphatidylethanolamine (18:0) [sn1] levels 4,492 European ancestry individuals T NR 2E-8 7.699 rs35138338 0.156 lysophosphatidylethanolamine 18:0 measurement (EFO:0010367)
 PMID:35668104
None Available GCST90024356 Phosphatidylethanolamine (16:0_20:4) levels 4,492 European ancestry individuals T NR 6E-7 6.222 rs35138338 0.138 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS1586768_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 2E-31 30.699 rs35138338 0.01814 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
GWAS1599346_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 6E-13 12.222 rs35138338 0.02118 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
1 to 18 of 18 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90019523 GWAS Catalog

Note Type Note Reference