GWAS1545536_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1545536_H (electrocardiography QTL GWAS1545536 (human)) Homo sapiens

Symbol: GWAS1545536_H
Name: electrocardiography QTL GWAS1545536 (human)
RGD ID: 597449462
Trait: electrocardiography
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,212,668 - 2,212,669RGD_MAPPER_PIPELINEGRCh38
GRCh3712,144,107 - 2,144,108RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1545536_HHumanelectrocardiography  IAGPrs2503715405850206 GWAS_CATALOGPMID:32916098

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604208FAAP20FA core complex associated protein 20121844772212720Human
151675789LOC124903823uncharacterized LOC124903823122123912220749Human


Peak: (rs2503715)
Human AssemblyChrPosition (strand)Source
GRCh3812,212,668 - 2,212,669RGD_MAPPER_PIPELINE


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597417500GWAS1513574_HPR interval QTL GWAS1513574 (human)1e-10PR intervalPR interval (CMO:0000233)122126682212669Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597452545GWAS1548619_Helectrocardiography QTL GWAS1548619 (human)4e-12electrocardiography122126682212669Human
597398972GWAS1495046_HQT interval QTL GWAS1495046 (human)4e-08QT intervalQT interval (CMO:0000235)122126682212669Human
597452852GWAS1548926_Helectrocardiography QTL GWAS1548926 (human)6e-09electrocardiography122126682212669Human
597452853GWAS1548927_Helectrocardiography QTL GWAS1548927 (human)8e-09electrocardiography122126682212669Human
597452854GWAS1548928_Helectrocardiography QTL GWAS1548928 (human)2e-17electrocardiography122126682212669Human
597491883GWAS1587957_HJT interval QTL GWAS1587957 (human)1e-35heart electrical impulse conduction trait (VT:2000017)heart electrical conduction measurement (CMO:0000230)122126682212669Human
597491105GWAS1587179_HQT interval QTL GWAS1587179 (human)1e-24QT intervalQT interval (CMO:0000235)122126682212669Human

1 to 10 of 52 rows


1 to 20 of 104 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1545536_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 4E-13 12.398 rs2503715 0.0622244 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1761310_H GCST90435259 Left ventricular end systolic volume (indexed to body surface area) 36,083 European or unknown ancestry individuals A 0.12738 2E-7 6.699 rs2503715 0.43069 left ventricular systolic function measurement (EFO:0008206)
 PMID:39966646
GWAS1761386_H GCST90435267 Left ventricular global circumferential strain 36,033 European or unknown ancestry individuals A 0.12738 5E-9 8.302 rs2503715 0.205798 left ventricular function (EFO:0004295)
 PMID:39966646
GWAS1761480_H GCST90435262 Left ventricular concentricity (left ventricular mass / left ventricular end diastolic volume) 36,083 European or unknown ancestry individuals A 0.12738 4E-10 9.398 rs2503715 0.00521196 left ventricular function (EFO:0004295)
 PMID:39966646
GWAS1761655_H GCST90435265 Left ventricular global radial strain 36,033 European or unknown ancestry individuals A 0.12738 0.000004 5.398 rs2503715 0.412153 left ventricular function (EFO:0004295)
 PMID:39966646
GWAS1766467_H GCST90179161 QRS duration 252,730 European ancestry, African ancestry, Hispanic or Latin American, South East Asian ancestry, South Asian ancestry individuals A 0.1291 8E-10 9.097 rs2503715 0.0307 QRS duration (OBA:1001086)
 PMID:36050321
GWAS1770813_H GCST90435257 Hypertrophic cardiomyopathy (MTAG) 28,106 European, African, Admixed American, East Asian, South Asian or unknown ancestry individuals (MTAG effective sample size boosted by left ventricular trait samples) G 0.871 1E-15 15 rs2503715 0.297 hypertrophic cardiomyopathy (EFO:0000538)
 PMID:39966646
GWAS1472185_H GCST010321 PR interval 271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals G 0.8653 1E-51 51 rs2503715 1.5966 PR interval (EFO:0004462)
 PMID:32439900
GWAS1486120_H GCST010346 TPE interval (resting) 71,338 European ancestry individuals A 0.13 4E-10 9.398 rs2503715 0.072 TPE interval measurement (EFO:0004644)
 PMID:32386560
GWAS1495046_H GCST90128423 QTc interval 79,167 European ancestry individuals, 1,614 African ancestry individuals, 78 Hispanic or Latin American individuals, 1,500 Asian ancestry individuals, 2,271 individuals ? NR 4E-8 7.398 rs2503715 0.98 QT interval (EFO:0004682)
 PMID:35389749
GWAS1781792_H GCST90179162 QRS duration 212,199 European ancestry individuals A 0.1346 4E-9 8.398 rs2503715 0.0311 QRS duration (OBA:1001086)
 PMID:36050321
GWAS1513574_H GCST007226 PR interval 2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals G 0.878 1E-10 10 rs2503715 2.221 PR interval (EFO:0004462)
 PMID:30679814
GWAS1518092_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 8E-12 11.097 rs2503715 0.0575122 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518093_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 4E-11 10.398 rs2503715 0.0554188 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518094_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 6E-10 9.222 rs2503715 0.0523344 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518097_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 2E-13 12.699 rs2503715 0.0639083 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518098_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 2E-15 14.699 rs2503715 0.0684208 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518099_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 3E-16 15.523 rs2503715 0.0702208 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518100_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 4E-17 16.398 rs2503715 0.0727182 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1518101_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals A 0.12399 3E-17 16.523 rs2503715 0.0725107 electrocardiography (EFO:0004327)
 PMID:32916098
1 to 20 of 104 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST010796 GWAS Catalog

Note Type Note Reference