GWAS1537048_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1537048_H (cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1537048 (human)) Homo sapiens

Symbol: GWAS1537048_H
Name: cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1537048 (human)
RGD ID: 597440974
Trait: cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 5E-180
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,282,806 - 58,282,807RGD_MAPPER_PIPELINEGRCh38
GRCh371558,575,005 - 58,575,006RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1537048_HHumanblood high density lipoprotein cholesterol level  IAGPrs28607776405850206 GWAS_CATALOGPMID:35213538

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1537048_HHumancholesterol:total lipids ratio  IAGPrs28607776405850206 GWAS_CATALOGPMID:35213538
GWAS1537048_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs28607776405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs28607776)
Human AssemblyChrPosition (strand)Source
GRCh381558,282,806 - 58,282,807RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597440974GWAS1537048_Hcholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1537048 (human)5e-180cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828280658282807Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597449849GWAS1545923_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1545923 (human)2e-254triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828280658282807Human
597445002GWAS1541076_Htriglyceride measurement, intermediate density lipoprotein measurement QTL GWAS1541076 (human)5e-191triglyceride measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155828280658282807Human
597443543GWAS1539617_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1539617 (human)2e-189triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828280658282807Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1537048_H GCST90093005 Cholesterol to total lipids ratio in very large HDL 115,056 European ancestry individuals A 0.868602 5E-180 179.302 rs28607776 0.168025 cholesterol:total lipids ratio (EFO:0020943)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1539617_H GCST90093014 Triglyceride levels in very large HDL 115,082 European ancestry individuals A 0.868597 2E-189 188.699 rs28607776 0.176595 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1541076_H GCST90092841 Triglyceride levels in IDL 115,082 European ancestry individuals A 0.868597 5E-191 190.302 rs28607776 0.177597 triglyceride measurement (EFO:0004530)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1545923_H GCST90092854 Triglyceride levels in large HDL 115,082 European ancestry individuals A 0.868597 2E-254 253.699 rs28607776 0.199461 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
Database
Acc Id
Source(s)
GWAS Catalog GCST90093005 GWAS Catalog

Note Type Note Reference