GWAS1536969_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1536969_H (kallikrein-7 measurement QTL GWAS1536969 (human)) Homo sapiens

Symbol: GWAS1536969_H
Name: kallikrein-7 measurement QTL GWAS1536969 (human)
RGD ID: 597440895
Trait: kallikrein-7 measurement
LOD Score: Not Available
P Value: 1.0E-45
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381950,983,811 - 50,983,812RGD_MAPPER_PIPELINEGRCh38
GRCh371951,487,067 - 51,487,068RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1536969_HHumankallikrein-7 measurement  IAGPrs1275221405850206 GWAS_CATALOGPMID:29875488

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1315024KLK7kallikrein related peptidase 7195097646850984064Human
155758686LOC127892072H3K4me1 hESC enhancer GRCh37_chr19:51486908-51487462195098365250984206Human


Peak: (rs1275221)
Human AssemblyChrPosition (strand)Source
GRCh381950,983,811 - 50,983,812RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597440895GWAS1536969_Hkallikrein-7 measurement QTL GWAS1536969 (human)1e-45kallikrein-7 measurement195098381150983812Human
597477416GWAS1573490_Hblood protein measurement QTL GWAS1573490 (human)2e-44blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195098381150983812Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1536969_H GCST90241679 Kallikrein-7 levels (KLK7.3378.49.2) 3,301 European ancestry individuals C 0.638 1E-45 45 rs1275221 0.36 kallikrein-7 measurement (EFO:0008195)
 PMID:29875488
GWAS1573490_H GCST90088351 Serum levels of protein KLK7 5,350 Icelandic ancestry individuals T 0.3832 2E-44 43.699 rs1275221 0.263431 blood protein measurement (EFO:0007937)
 PMID:35078996
Database
Acc Id
Source(s)
GWAS Catalog GCST90241679 GWAS Catalog

Note Type Note Reference