GWAS1535247_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1535247_H (coronary artery calcification QTL GWAS1535247 (human)) Homo sapiens

Symbol: GWAS1535247_H
Name: coronary artery calcification QTL GWAS1535247 (human)
RGD ID: 597439173
Trait: coronary artery calcification
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38846,605,288 - 46,605,289RGD_MAPPER_PIPELINEGRCh38
GRCh37847,516,910 - 47,516,911RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1535247_HHumanCoronary Artery Calcification  IAGPrs7820474405850206 GWAS_CATALOGPMID:29221444

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1535247_HHumanCoronary artery calcification  IAGPrs7820474405850206 GWAS_CATALOGPMID:29221444
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1535247_HHumancoronary artery calcification  IAGPrs7820474405850206 GWAS_CATALOGPMID:29221444

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346746ASNSP1ASNS pseudogene 184657921346617643Human


Peak: (rs7820474)
Human AssemblyChrPosition (strand)Source
GRCh38846,605,288 - 46,605,289RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597439173GWAS1535247_Hcoronary artery calcification QTL GWAS1535247 (human)0.000007coronary artery calcification84660528846605289Human
2289597BW470_HBody weight QTL 470 (human)1.3Body weightBMI83977088765770887Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1535247_H GCST005173 Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes 345 African American cases, 346 African American controls ? NR 0.000007 5.155 rs7820474 0.149 coronary artery calcification (EFO:0004723)
 PMID:29221444
Database
Acc Id
Source(s)
GWAS Catalog GCST005173 GWAS Catalog

Note Type Note Reference