GWAS1534628_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1534628_H (systolic blood pressure QTL GWAS1534628 (human)) Homo sapiens

Symbol: GWAS1534628_H
Name: systolic blood pressure QTL GWAS1534628 (human)
RGD ID: 597438554
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,846,764 - 11,846,765RGD_MAPPER_PIPELINEGRCh38
GRCh37111,906,821 - 11,906,822RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1534628_HHumansystolic blood pressure  IAGPrs12744757405850206 GWAS_CATALOGPMID:28739976

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1534628_HHumansystolic blood pressure  IAGPrs12744757405850206 GWAS_CATALOGPMID:28739976

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2946882NPPA-AS1NPPA antisense RNA 111184031911847616Human
730878NPPAnatriuretic peptide A11184570911847783Human


Peak: (rs12744757)
Human AssemblyChrPosition (strand)Source
GRCh38111,846,764 - 11,846,765RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597434425GWAS1530499_Hsystolic blood pressure QTL GWAS1530499 (human)8e-23systolic blood pressuresystolic blood pressure (CMO:0000004)11184676411846765Human
597438554GWAS1534628_Hsystolic blood pressure QTL GWAS1534628 (human)2e-10systolic blood pressuresystolic blood pressure (CMO:0000004)11184676411846765Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1534628_H GCST004776 Systolic blood pressure 150,134 European ancestry individuals T 0.059 2E-10 9.699 rs12744757 0.596 systolic blood pressure (EFO:0006335)
 PMID:28739976
GWAS1530499_H GCST004776 Systolic blood pressure 150,134 European ancestry individuals T 0.059 8E-23 22.097 rs12744757 0.695 systolic blood pressure (EFO:0006335)
 PMID:28739976
Database
Acc Id
Source(s)
GWAS Catalog GCST004776 GWAS Catalog

Note Type Note Reference