GWAS1531331_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1531331_H (high density lipoprotein cholesterol measurement QTL GWAS1531331 (human)) Homo sapiens

Symbol: GWAS1531331_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1531331 (human)
RGD ID: 597435257
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,289,171 - 58,289,172RGD_MAPPER_PIPELINEGRCh38
GRCh371558,581,370 - 58,581,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1531331_HHumanblood high density lipoprotein cholesterol level  IAGPrs12148399405850206 GWAS_CATALOGPMID:29507422

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1531331_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs12148399405850206 GWAS_CATALOGPMID:29507422

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12148399)
Human AssemblyChrPosition (strand)Source
GRCh381558,289,171 - 58,289,172RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597404505GWAS1500579_Hhigh density lipoprotein cholesterol measurement QTL GWAS1500579 (human)0.000008high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828917158289172Human
597016993GWAS1113067_Htotal cholesterol measurement QTL GWAS1113067 (human)7e-11total cholesterol measurementblood total cholesterol level (CMO:0000051)155828917158289172Human
597435256GWAS1531330_Hhigh density lipoprotein cholesterol measurement QTL GWAS1531330 (human)4e-27high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828917158289172Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597016992GWAS1113066_Htotal cholesterol measurement QTL GWAS1113066 (human)9e-09total cholesterol measurementblood total cholesterol level (CMO:0000051)155828917158289172Human
597435257GWAS1531331_Hhigh density lipoprotein cholesterol measurement QTL GWAS1531331 (human)0.000003high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828917158289172Human
597435258GWAS1531332_Hhigh density lipoprotein cholesterol measurement QTL GWAS1531332 (human)1e-33high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155828917158289172Human
597505092GWAS1601166_H1-palmitoyl-2-oleoyl-GPE (16:0/18:1) measurement QTL GWAS1601166 (human)2e-181-palmitoyl-2-oleoyl-GPE (16:0/18:1) measurement155828917158289172Human
597483334GWAS1579408_Hglycerophospholipid measurement QTL GWAS1579408 (human)5e-09glycerophospholipid measurement155828917158289172Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1531331_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T 0.888 0.000003 5.523 rs12148399 0.1 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS1113066_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T 0.861 9E-9 8.046 rs12148399 0.038 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1113067_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T NR 7E-11 10.155 rs12148399 0.04 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1500579_H GCST008035 High density lipoprotein cholesterol levels 10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals ? NR 0.000008 5.097 rs12148399 0.7415018 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:31217584
GWAS1531330_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T 0.861 4E-27 26.398 rs12148399 0.059 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS1531332_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T NR 1E-33 33 rs12148399 0.061 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS1579408_H GCST90024600 Total Phosphatidylglycerol levels 4,492 European ancestry individuals A NR 5E-9 8.302 rs12148399 0.182 glycerophospholipid measurement (EFO:0007630)
 PMID:35668104
GWAS1601166_H GCST90102725 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) levels 8,809 European ancestry individuals A NR 2E-18 17.699 rs12148399 0.193 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) measurement (EFO:0800608)
 PMID:35050183
Database
Acc Id
Source(s)
GWAS Catalog GCST007140 GWAS Catalog

Note Type Note Reference