GWAS1528004_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1528004_H (protein measurement QTL GWAS1528004 (human)) Homo sapiens

Symbol: GWAS1528004_H
Name: protein measurement QTL GWAS1528004 (human)
RGD ID: 597431930
Trait: protein measurement
LOD Score: Not Available
P Value: 7.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811,023,525 - 1,023,526RGD_MAPPER_PIPELINEGRCh38
GRCh371958,905 - 958,906RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1528004_HHumanprotein measurement  IAGPrs2710890405850206 GWAS_CATALOGPMID:39528825

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606873AGRNagrin110201201056116Human


Peak: (rs2710890)
Human AssemblyChrPosition (strand)Source
GRCh3811,023,525 - 1,023,526RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597431930GWAS1528004_Hprotein measurement QTL GWAS1528004 (human)7e-21protein measurement110235251023526Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1528004_H GCST90422691 Agrin levels 2,721 European ancestry individuals G 0.38035 7E-21 20.155 rs2710890 0.2519 protein measurement (EFO:0004747)
 PMID:39528825
GWAS1729120_H GCST90313198 AGRN/B4GALT1 protein level ratio 43,509 European ancestry individuals ? NR 3E-657 656.523 rs2710890 0.382648 AGRN/B4GALT1 protein level ratio in blood (OBA:2053638)
 PMID:38412862
GWAS1729125_H GCST90313199 AGRN/BTN2A1 protein level ratio 43,509 European ancestry individuals ? NR 3E-841 840.523 rs2710890 0.433456 AGRN/BTN2A1 protein level ratio in blood (OBA:2053639)
 PMID:38412862
GWAS1729127_H GCST90313200 AGRN/CRIM1 protein level ratio 43,509 European ancestry individuals ? NR 1E-642 642 rs2710890 0.379072 AGRN/CRIM1 protein level ratio in blood (OBA:2053640)
 PMID:38412862
GWAS1729174_H GCST90313201 AGRN/HSPG2 protein level ratio 43,509 European ancestry individuals ? NR 7E-803 802.155 rs2710890 0.429683 AGRN/HSPG2 protein level ratio in blood (OBA:2053641)
 PMID:38412862
Database
Acc Id
Source(s)
GWAS Catalog GCST90422691 GWAS Catalog

Note Type Note Reference