GWAS1525147_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1525147_H (erythrocyte count QTL GWAS1525147 (human)) Homo sapiens

Symbol: GWAS1525147_H
Name: erythrocyte count QTL GWAS1525147 (human)
RGD ID: 597429073
Trait: erythrocyte count
Measurement Type: red blood cell count   (CMO:0000025)    
LOD Score: Not Available
P Value: 2.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,386,521 - 58,386,522RGD_MAPPER_PIPELINEGRCh38
GRCh371558,678,720 - 58,678,721RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1525147_HHumanred blood cell count  IAGPrs261290405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1525147_HHumanerythrocyte count  IAGPrs261290405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs261290)
Human AssemblyChrPosition (strand)Source
GRCh381558,386,521 - 58,386,522RGD_MAPPER_PIPELINE


1 to 10 of 215 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597449628GWAS1545702_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1545702 (human)3e-114omega-6 polyunsaturated fatty acid measurement155838652158386522Human
597517212GWAS1613286_Hremnant cholesterol measurement QTL GWAS1613286 (human)2e-54remnant cholesterol measurement155838652158386522Human
597446032GWAS1542106_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS1542106 (human)5e-24blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)155838652158386522Human
597509521GWAS1605595_H1-stearoyl-2-docosahexaenoyl-GPE (18:0/22:6) measurement QTL GWAS1605595 (human)8e-711-stearoyl-2-docosahexaenoyl-GPE (18:0/22:6) measurement155838652158386522Human
597441938GWAS1538012_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1538012 (human)6e-267free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838652158386522Human
597441427GWAS1537501_Hlow density lipoprotein cholesterol measurement QTL GWAS1537501 (human)4e-21low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838652158386522Human
597448077GWAS1544151_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS1544151 (human)2e-13low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838652158386522Human
597505420GWAS1601494_H1-palmitoyl-2-eicosapentaenoyl-GPE (16:0/20:5) measurement QTL GWAS1601494 (human)7e-681-palmitoyl-2-eicosapentaenoyl-GPE (16:0/20:5) measurement155838652158386522Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597516680GWAS1612754_Hfree cholesterol in small HDL measurement QTL GWAS1612754 (human)8e-62blood HDL cholesterol amount (VT:0000184)155838652158386522Human

1 to 10 of 215 rows


1 to 20 of 233 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1525147_H GCST90002403 Red blood cell count 408,112 British individuals C 0.653928 2E-12 11.699 rs261290 0.016420167 erythrocyte count (EFO:0004305)
 PMID:32888494
GWAS1725951_H GCST009364 Triglyceride levels x long total sleep time interaction (2df test) at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls ? NR 9E-13 12.046 rs261290 0.01372 triglyceride measurement (EFO:0004530)
sleep duration trait (OBA:2040171)
 PMID:31719535
GWAS1738508_H GCST90091665 Postprandial mean diameter of HDL particles null C 0.649886155 2E-32 31.699 rs261290 0.263393 HDL particle size (OBA:2050115)
 PMID:34610981
GWAS1739030_H GCST90091776 Postprandial cholesterol esters in very small VLDL null C 0.649920635 7E-11 10.155 rs261290 0.14548 esterified cholesterol measurement (EFO:0008589)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739031_H GCST90091775 Postprandial total cholesterol in very small VLDL null C 0.649920635 8E-12 11.097 rs261290 0.152492 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739232_H GCST90091523 Fasting mean diameter of HDL particles null C 0.652234896 2E-36 35.699 rs261290 0.268791 HDL particle size (OBA:2050115)
 PMID:34610981
GWAS1739296_H GCST90091619 Fasting mean diameter of VLDLD particles null C 0.652234896 1E-8 8 rs261290 0.122309 VLDL particle size (OBA:2050114)
 PMID:34610981
None Available GCST90091759 Postprandial mean diameter of VLDLD particles null C 0.649886155 1E-8 8 rs261290 0.128087 VLDL particle size (OBA:2050114)
 PMID:34610981
GWAS1748074_H GCST90093025 Phospholipids to total lipids ratio in very large VLDL 114,160 European ancestry individuals T 0.34511 3E-70 69.523 rs261290 0.0771366 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748330_H GCST90092998 Free cholesterol levels in VLDL 115,082 European ancestry individuals T 0.345355 2E-29 28.699 rs261290 0.048548 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749391_H GCST90092999 Total lipid levels in VLDL 115,082 European ancestry individuals T 0.345355 3E-12 11.523 rs261290 0.0297784 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749703_H GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals T 0.345355 5E-97 96.302 rs261290 0.0902082 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749833_H GCST90092976 Phospholipid levels in small VLDL 115,082 European ancestry individuals T 0.345355 4E-53 52.398 rs261290 0.0665488 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750747_H GCST90093037 Phospholipids to total lipids ratio in very small VLDL 115,082 European ancestry individuals T 0.345355 1E-35 35 rs261290 0.052866 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1755871_H GCST90302068 Triglycerides to total lipids ratio in medium VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3537 7E-300 299.155 rs261290 0.1501 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1756919_H GCST90093001 Phospholipid levels in VLDL 115,082 European ancestry individuals T 0.345355 1E-34 34 rs261290 0.0526908 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1756940_H GCST90092974 Total lipid levels in small VLDL 115,082 European ancestry individuals T 0.345355 8E-73 72.097 rs261290 0.0774769 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757054_H GCST90092975 Concentration of small VLDL particles 115,082 European ancestry individuals T 0.345355 1E-75 75 rs261290 0.0787323 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757677_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals T 0.345355 1E-69 69 rs261290 0.0766352 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757688_H GCST90092970 Cholesteryl ester levels in small VLDL 115,082 European ancestry individuals T 0.345355 7E-86 85.155 rs261290 0.0852043 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
1 to 20 of 233 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90002403 GWAS Catalog

Note Type Note Reference