GWAS1525030_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1525030_H (red blood cell folate measurement QTL GWAS1525030 (human)) Homo sapiens

Symbol: GWAS1525030_H
Name: red blood cell folate measurement QTL GWAS1525030 (human)
RGD ID: 597428956
Trait: red blood cell folate measurement
LOD Score: Not Available
P Value: 9.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,805,747 - 11,805,748RGD_MAPPER_PIPELINEGRCh38
GRCh37111,865,804 - 11,865,805RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1525030_HHumanred blood cell folate measurement  IAGPrs13306561405850206 GWAS_CATALOGPMID:30339177

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733483MTHFRmethylenetetrahydrofolate reductase11178572311805964Human
329406428LOC129929416ATAC-STARR-seq lymphoblastoid silent region 27311180571911805768Human


Peak: (rs13306561)
Human AssemblyChrPosition (strand)Source
GRCh38111,805,747 - 11,805,748RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597428956GWAS1525030_Hred blood cell folate measurement QTL GWAS1525030 (human)9e-12red blood cell folate measurement11180574711805748Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597529743GWAS1625817_Hhypertension, pregnancy-induced QTL GWAS1625817 (human)0.0000001hypertension, pregnancy-induced11180574711805748Human
597463562GWAS1559636_Hpulse pressure measurement, alcohol drinking QTL GWAS1559636 (human)6e-16pulse pressure measurement, alcohol drinkingpulse pressure (CMO:0000292)11180574711805748Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597527600GWAS1623674_Hpreeclampsia, hypertension, pregnancy-induced QTL GWAS1623674 (human)7e-12preeclampsia, hypertension, pregnancy-induced11180574711805748Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1525030_H GCST007580 Red blood cell folate levels 2,232 Irish ancestry individuals ? NR 9E-12 11.046 rs13306561 0.04649 red blood cell folate measurement (EFO:0009703)
 PMID:30339177
GWAS1559636_H GCST006168 Pulse pressure x alcohol consumption interaction (2df test) 91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers A 0.86 6E-16 15.222 rs13306561 N/A pulse pressure measurement (EFO:0005763)
alcohol drinking (EFO:0004329)
 PMID:29912962
GWAS1623674_H GCST90269904 Preeclampsia or other maternal hypertension (maternal genotype effect) 15,200 European ancestry cases, 115,007 European ancestry controls G 0.14 7E-12 11.155 rs13306561 0.88 preeclampsia (EFO:0000668)
 PMID:37285119
GWAS1625817_H GCST90245819 Hypertension complicating pregnancy 10,097 European ancestry cases, 331,138 European ancestry controls ? NR 1E-7 7 rs13306561 N/A PMID:36553520
Database
Acc Id
Source(s)
GWAS Catalog GCST007580 GWAS Catalog

Note Type Note Reference