GWAS1524868_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1524868_H (protein measurement QTL GWAS1524868 (human)) Homo sapiens

Symbol: GWAS1524868_H
Name: protein measurement QTL GWAS1524868 (human)
RGD ID: 597428794
Trait: protein measurement
LOD Score: Not Available
P Value: 2.0E-19
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38345,390,931 - 45,390,932RGD_MAPPER_PIPELINEGRCh38
GRCh37345,432,423 - 45,432,424RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1524868_HHumanprotein measurement  IAGPrs115353662405850206 GWAS_CATALOGPMID:39528825

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318191LARS2leucyl-tRNA synthetase 2, mitochondrial34538857645549407Human


Peak: (rs115353662)
Human AssemblyChrPosition (strand)Source
GRCh38345,390,931 - 45,390,932RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
597428794GWAS1524868_Hprotein measurement QTL GWAS1524868 (human)2e-19protein measurement34539093145390932Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
597432352GWAS1528426_Hprotein measurement QTL GWAS1528426 (human)2e-11protein measurement34539093145390932Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1524868_H GCST90425468 Lactotransferrin (analyte X2780.35) levels 3,506 European ancestry individuals T 0.0727767 2E-19 18.699 rs115353662 0.4163 protein measurement (EFO:0004747)
 PMID:39528825
GWAS1528426_H GCST90421161 Beta-2-microglobulin (analyte X10574.10) levels 3,506 European ancestry individuals T 0.0718031 2E-11 10.699 rs115353662 0.3192 protein measurement (EFO:0004747)
 PMID:39528825
Database
Acc Id
Source(s)
GWAS Catalog GCST90425468 GWAS Catalog

Note Type Note Reference