GWAS1524616_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1524616_H (phosphatidylethanolamine measurement QTL GWAS1524616 (human)) Homo sapiens

Symbol: GWAS1524616_H
Name: phosphatidylethanolamine measurement QTL GWAS1524616 (human)
RGD ID: 597428542
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 3.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,415,791 - 58,415,792RGD_MAPPER_PIPELINEGRCh38
GRCh371558,707,990 - 58,707,991RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1524616_HHumanphosphatidylethanolamine measurement  IAGPrs79341002405850206 GWAS_CATALOGPMID:34503513

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs79341002)
Human AssemblyChrPosition (strand)Source
GRCh381558,415,791 - 58,415,792RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597428542GWAS1524616_Hphosphatidylethanolamine measurement QTL GWAS1524616 (human)3e-13phosphatidylethanolamine measurement155841579158415792Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597418556GWAS1514630_Hphosphatidylcholine measurement QTL GWAS1514630 (human)5e-14phosphatidylcholine measurement155841579158415792Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597515232GWAS1611306_Hcomplex trait QTL GWAS1611306 (human)7e-09complex trait155841579158415792Human
597425349GWAS1521423_Hphosphatidylethanolamine measurement QTL GWAS1521423 (human)2e-11phosphatidylethanolamine measurement155841579158415792Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1524616_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals G NR 3E-13 12.523 rs79341002 0.251749 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1514630_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals G NR 5E-14 13.302 rs79341002 0.26493 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1521423_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals G NR 2E-11 10.699 rs79341002 0.230403 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1611306_H GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 7E-9 8.155 rs79341002 N/A complex trait (EFO:0010578)
 PMID:37277458
Database
Acc Id
Source(s)
GWAS Catalog GCST90060310 GWAS Catalog

Note Type Note Reference