GWAS1524592_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1524592_H (phosphatidylethanolamine measurement QTL GWAS1524592 (human)) Homo sapiens

Symbol: GWAS1524592_H
Name: phosphatidylethanolamine measurement QTL GWAS1524592 (human)
RGD ID: 597428518
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,331,326 - 58,331,327RGD_MAPPER_PIPELINEGRCh38
GRCh371558,623,525 - 58,623,526RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1524592_HHumanphosphatidylethanolamine measurement  IAGPrs1122208405850206 GWAS_CATALOGPMID:34503513

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1122208)
Human AssemblyChrPosition (strand)Source
GRCh381558,331,326 - 58,331,327RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597426120GWAS1522194_Hphosphatidylcholine measurement QTL GWAS1522194 (human)9e-13phosphatidylcholine measurement155833132658331327Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597425404GWAS1521478_Hphosphatidylethanolamine measurement QTL GWAS1521478 (human)4e-11phosphatidylethanolamine measurement155833132658331327Human
597428518GWAS1524592_Hphosphatidylethanolamine measurement QTL GWAS1524592 (human)3e-10phosphatidylethanolamine measurement155833132658331327Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1524592_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals C NR 3E-10 9.523 rs1122208 0.0730681 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1521478_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals C NR 4E-11 10.398 rs1122208 0.0780097 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1522194_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 9E-13 12.046 rs1122208 0.0858786 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
Database
Acc Id
Source(s)
GWAS Catalog GCST90060272 GWAS Catalog

Note Type Note Reference